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@bhklab

BHKLAB

The Haibe-Kains Laboratory @ Princess Margaret Cancer Centre
README.md

Mission

Our overarching goal consists of developing cutting-edge computational tools and predictive models to identify new cancer vulnerabilities and improve the way precision oncology is delivered to patients.

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  1. PharmacoGx PharmacoGx Public

    R package to analyze large-scale pharmacogenomic datasets.

    R 66 26

  2. med-imagetools med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    Python 36 9

  3. CoreGx CoreGx Public

    Shared code for both PharmacoGx and RadioGx

    R 2 3

  4. AnnotationGx AnnotationGx Public

    An R package to query various bio/chem-informatics databases APIs to construct annotation files.

    R 1 1

Repositories

Showing 10 of 180 repositories
  • med-imagetools Public

    Transparent and reproducible medical image processing pipelines in Python.

    bhklab/med-imagetools’s past year of commit activity
    Python 36 MIT 9 16 5 Updated Nov 17, 2024
  • med-imagenet Public

    Med-ImageNet processing scripts via Med-ImageTools AutoPipeline

    bhklab/med-imagenet’s past year of commit activity
    1 GPL-3.0 0 0 0 Updated Nov 15, 2024
  • analyze_readii_outputs Public

    Code for analyzing outputs from the READII package or the readii-orcestra pipeline.

    bhklab/analyze_readii_outputs’s past year of commit activity
    Python 1 MIT 0 7 0 Updated Nov 15, 2024
  • handbook Public

    Lab Handbook For BHKLab

    bhklab/handbook’s past year of commit activity
    1 0 31 (2 issues need help) 14 Updated Nov 15, 2024
  • ispy-readii Public

    Running READII on the I-SPY cohort for radiogenomic analysis.

    bhklab/ispy-readii’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Nov 14, 2024
  • readii Public

    Radiomic Extraction and Analysis for DICOM Images (READII)

    bhklab/readii’s past year of commit activity
    Python 3 MIT 0 17 (1 issue needs help) 1 Updated Nov 13, 2024
  • SCARF Public
    bhklab/SCARF’s past year of commit activity
    Jupyter Notebook 1 Apache-2.0 1 0 0 Updated Nov 12, 2024
  • PMATCH-web Public
    bhklab/PMATCH-web’s past year of commit activity
    JavaScript 0 0 0 0 Updated Nov 5, 2024
  • SYNERGxDB Public

    SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.

    bhklab/SYNERGxDB’s past year of commit activity
    JavaScript 1 1 2 0 Updated Oct 30, 2024
  • Quantitative-Review Public

    Quantitative review of methods for analyzing multiple regions of interest (ROIs) in the context of engineered radiomics.

    bhklab/Quantitative-Review’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Oct 29, 2024
View all repositories