BHKLAB

All

180 repositories

med-imagetools
Public
Transparent and reproducible medical image processing pipelines in Python.
python dicom torch medical nrrd nifti machine-learning deep-learning pytorch
Python
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MIT License
•9•36•16•5•Updated Nov 17, 2024Nov 17, 2024
med-imagenet
Public
Med-ImageNet processing scripts via Med-ImageTools AutoPipeline
GNU General Public License v3.0
•0•1•0•0•Updated Nov 15, 2024Nov 15, 2024
analyze_readii_outputs
Public
Code for analyzing outputs from the READII package or the readii-orcestra pipeline.
Python
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MIT License
•0•1•7•0•Updated Nov 15, 2024Nov 15, 2024
handbook
Public
Lab Handbook For BHKLab
0•1•31•14•Updated Nov 15, 2024Nov 15, 2024
ispy-readii
Public
Running READII on the I-SPY cohort for radiogenomic analysis.
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Nov 14, 2024Nov 14, 2024
readii
Public
Radiomic Extraction and Analysis for DICOM Images (READII)
Python
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MIT License
•0•3•17•1•Updated Nov 13, 2024Nov 13, 2024
SCARF
Public
Jupyter Notebook
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Apache License 2.0
•1•1•0•0•Updated Nov 12, 2024Nov 12, 2024
PMATCH-web
Public
JavaScript
•0•0•0•0•Updated Nov 5, 2024Nov 5, 2024
SYNERGxDB
Public
SYNERGxDB is a comprehensive database to explore synergistic drug combinations for biomarker discovery.
JavaScript
•1•1•2•0•Updated Oct 30, 2024Oct 30, 2024
Quantitative-Review
Public
Quantitative review of methods for analyzing multiple regions of interest (ROIs) in the context of engineered radiomics.
Python
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MIT License
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
Lung-Lesion-Treatment-Response-Prediction
Public
Code + Data for Lung Lesion Treatment Response Prediction
Python
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MIT License
•0•0•0•0•Updated Oct 29, 2024Oct 29, 2024
KuLGaP
Public
KuLGap is a web application that allows users to calculate KuLGaP as well as several other measurements of response to anti-tumour therapy.
JavaScript
•0•0•2•0•Updated Oct 22, 2024Oct 22, 2024
pyradiomics-fork
Public
[FORK] Open-source python package for the extraction of Radiomics features from 2D and 3D images and binary masks. Support: https://discourse.slicer.org/c/community/radiomics
Jupyter Notebook
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BSD 3-Clause "New" or "Revised" License
•498•0•0•0•Updated Oct 21, 2024Oct 21, 2024
CBWWorkshop2024
Public
R
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Other
•2•1•0•0•Updated Oct 18, 2024Oct 18, 2024
SignatureSets
Public
Compendium of published molecular signatures
HTML
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MIT License
•0•0•0•0•Updated Oct 16, 2024Oct 16, 2024
PredictioR
Public
HTML
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MIT License
•0•0•0•0•Updated Oct 16, 2024Oct 16, 2024
ORCESTRA
Public
ORCESTRA is a new web application that enables users to search, request and manage pharmacogenomic datasets (PSets).
JavaScript
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Apache License 2.0
•2•4•15•8•Updated Sep 18, 2024Sep 18, 2024
CoreGx
Public
Shared code for both PharmacoGx and RadioGx
pharmacogx-backend radiogx pharmacogx toxicogx
R
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GNU General Public License v3.0
•3•2•11•0•Updated Sep 12, 2024Sep 12, 2024
PharmacogenomicsWorkshop2024
Public
MIT License
•0•0•0•0•Updated Sep 10, 2024Sep 10, 2024
orcestra-new-api
Public
Python
•1•0•0•0•Updated Aug 1, 2024Aug 1, 2024
CervixRadiomics
Public
Jupyter Notebook
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MIT License
•0•0•0•0•Updated Jul 29, 2024Jul 29, 2024
PredictIO_Nextflow
Public
Nextflow
•0•0•0•0•Updated Jul 18, 2024Jul 18, 2024
PymRMRe
Public
C++
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MIT License
•3•11•8•2•Updated Jul 16, 2024Jul 16, 2024
ORCESTRA-api
Public
Python
•0•2•10•0•Updated Jul 3, 2024Jul 3, 2024
GraphComm
Public
Jupyter Notebook
•2•2•0•0•Updated Jul 2, 2024Jul 2, 2024
readii-fmcib
Public
Taming the unicorn that is FMCIB
Python
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MIT License
•0•1•2•0•Updated Jun 13, 2024Jun 13, 2024
cinet
Public
Jupyter Notebook
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MIT License
•1•0•0•0•Updated May 16, 2024May 16, 2024
synthLethal
Public
R
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Other
•0•0•0•0•Updated May 15, 2024May 15, 2024
AnnotationGx
Public
An R package to query various bio/chem-informatics databases APIs to construct annotation files.
R
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MIT License
•1•1•4•0•Updated May 15, 2024May 15, 2024
XevaDB
Public
XevaDB is a database for PDX pharmacogenomic data.
pdx patientderivedxenografts
JavaScript
•0•1•11•0•Updated May 1, 2024May 1, 2024