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Chris T. A. Evelo
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- affiliation: Maastricht University, Department of Bioinformatics, The Netherlands
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2020 – today
- 2023
- [j30]Ammar Ammar
, Rachel Cavill
PSnpBind-ML: predicting the effect of binding site mutations on protein-ligand binding affinity. J. Cheminformatics 15(1): 31 (2023) - [c8]Ewelina Grudzien, Eelke van der Horst, Frank van den Bergh, Maria H. Traka, Duncan Ng, Falk Hildebrand, Chris T. A. Evelo, Susan L. M. Coort, Duygu Dede Sener, Elisa Cirillo:
Managing food and microbiome studies data using Fairspace, a flexible and FAIR data management platform. SWAT4HCLS 2023: 171-172 - 2022
- [j29]Nicolas Matentzoglu
A Simple Standard for Sharing Ontological Mappings (SSSOM). Database J. Biol. Databases Curation 2022(2022) (2022) - [j28]Friederike Ehrhart
A formalization of one of the main claims of "Overlap of vitamin A and vitamin D target genes with CAKUT-related processes" by Ozisik et al. 20211. Data Sci. 5(1): 25-27 (2022) - [j27]Ammar Ammar
PSnpBind: a database of mutated binding site protein-ligand complexes constructed using a multithreaded virtual screening workflow. J. Cheminformatics 14(1): 8 (2022) - 2021
- [j26]Marvin Martens
WikiPathways: connecting communities. Nucleic Acids Res. 49(Database-Issue): D613-D621 (2021) - [j25]Friederike Ehrhart
Ten simple rules to make your publication look better. PLoS Comput. Biol. 17(5) (2021) - [j24]Kristina Hanspers
Ten simple rules for creating reusable pathway models for computational analysis and visualization. PLoS Comput. Biol. 17(8) (2021) - [j23]Chaitra Sarathy
Comparison of metabolic states using genome-scale metabolic models. PLoS Comput. Biol. 17(11) (2021) - [i6]Nicolas Matentzoglu, James P. Balhoff, Susan M. Bello, Chris Bizon, Matthew H. Brush, Tiffany J. Callahan, Christopher G. Chute, William D. Duncan, Chris T. A. Evelo, Davera Gabriel, John Graybeal, Alasdair J. G. Gray, Benjamin M. Gyori, Melissa A. Haendel, Henriette Harmse, Nomi L. Harris, Ian Harrow, Harshad Hegde, Amelia L. Hoyt, Charles Tapley Hoyt, Dazhi Jiao, Ernesto Jiménez-Ruiz, Simon Jupp, Hyeongsik Kim, Sebastian Köhler, Thomas Liener, Qinqin Long, James Malone, James A. McLaughlin, Julie A. McMurry, Sierra A. T. Moxon, Monica C. Munoz-Torres, David Osumi-Sutherland, James A. Overton, Bjoern Peters, Tim E. Putman, Núria Queralt-Rosinach, Kent A. Shefchek, Harold Solbrig, Anne E. Thessen, Tania Tudorache, Nicole A. Vasilevsky, Alex H. Wagner, Christopher J. Mungall:
A Simple Standard for Sharing Ontological Mappings (SSSOM). CoRR abs/2112.07051 (2021) - 2020
- [j22]Annika Jacobsen, Ricardo de Miranda Azevedo
FAIR Principles: Interpretations and Implementation Considerations. Data Intell. 2(1-2): 10-29 (2020) - [i5]Susanne Hollmann
The need for standardisation in life science research - an approach to excellence and trust. F1000Research 9: 1398 (2020)
2010 – 2019
- 2018
- [j21]Denise N. Slenter
WikiPathways: a multifaceted pathway database bridging metabolomics to other omics research. Nucleic Acids Res. 46(Database-Issue): D661-D667 (2018) - [c7]Tobias Kuhn
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. eScience 2018: 83-92 - [i4]Tobias Kuhn, Albert Meroño-Peñuela, Alexander Malic
Nanopublications: A Growing Resource of Provenance-Centric Scientific Linked Data. CoRR abs/1809.06532 (2018) - [i3]Martina Kutmon
CyTargetLinker app update: A flexible solution for network extension in Cytoscape. F1000Research 7: 743 (2018) - [i2]Friederike Ehrhart
Providing gene-to-variant and variant-to-gene database identifier mappings to use with BridgeDb mapping services. F1000Research 7: 1390 (2018) - 2017
- [j20]Egon L. Willighagen
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 33:1-33:19 (2017) - [j19]Egon L. Willighagen
Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 53 (2017) - [c6]Tobias Kuhn
Reliable Granular References to Changing Linked Data. ISWC (1) 2017: 436-451 - [c5]Ryan A. Miller, Denise N. Slenter, Martina Kutmon, Jonathan Mélius, Georg Summer, Chris T. A. Evelo, Egon L. Willighagen:
Visualizing Metabolomics Data in Directed Biological Networks. SWAT4LS 2017 - [i1]Tobias Kuhn
Reliable Granular References to Changing Linked Data. CoRR abs/1708.09193 (2017) - 2016
- [j18]Nicolas Rodriguez
The systems biology format converter. BMC Bioinform. 17: 154 (2016) - [j17]Ola Spjuth
XMetDB: an open access database for xenobiotic metabolism. J. Cheminformatics 8(1): 47:1-47:8 (2016) - [j16]Martina Kutmon
WikiPathways: capturing the full diversity of pathway knowledge. Nucleic Acids Res. 44(Database-Issue): 488-494 (2016) - [j15]Anwesha Bohler, Guanming Wu, Martina Kutmon
Reactome from a WikiPathways Perspective. PLoS Comput. Biol. 12(5) (2016) - [j14]Andra Waagmeester, Martina Kutmon
Using the Semantic Web for Rapid Integration of WikiPathways with Other Biological Online Data Resources. PLoS Comput. Biol. 12(6) (2016) - [c4]Ryan A. Miller, Jonathan Mélius, Nuno Nunes, Egon L. Willighagen, Peter Woollard, Chris T. A. Evelo:
Finding Drugs with Common Downstream Effects, Using Direction Information in Biological Pathways. SWAT4LS 2016 - 2015
- [j13]Diana M. Hendrickx
diXa: a data infrastructure for chemical safety assessment. Bioinform. 31(9): 1505-1507 (2015) - [j12]Anwesha Bohler, Lars M. T. Eijssen, Martijn P. van Iersel, Christ Leemans
Automatically visualise and analyse data on pathways using PathVisioRPC from any programming environment. BMC Bioinform. 16: 267:1-267:12 (2015) - [j11]Martina Kutmon
PathVisio 3: An Extendable Pathway Analysis Toolbox. PLoS Comput. Biol. 11(2) (2015) - 2014
- [j10]Martijn P. van Iersel
Integrated Visualization of a Multi-omics Study of Starvation in Mouse Intestine. J. Integr. Bioinform. 11(1) (2014) - [j9]Alasdair J. G. Gray
Applying linked data approaches to pharmacology: Architectural decisions and implementation. Semantic Web 5(2): 101-113 (2014) - [c3]Colin R. Batchelor, Christian Y. A. Brenninkmeijer, Christine Chichester, Mark Davies, Daniela Digles
Scientific Lenses to Support Multiple Views over Linked Chemistry Data. ISWC (1) 2014: 98-113 - 2013
- [j8]Lars M. T. Eijssen, Magali Jaillard, Michiel E. Adriaens
User-friendly solutions for microarray quality control and pre-processing on ArrayAnalysis.org. Nucleic Acids Res. 41(Webserver-Issue): 71-76 (2013) - 2012
- [j7]Alexander C. Zambon, Stan Gaj, Isaac Ho, Kristina Hanspers, Karen Vranizan, Chris T. A. Evelo, Bruce R. Conklin
GO-Elite: a flexible solution for pathway and ontology over-representation. Bioinform. 28(16): 2209-2210 (2012) - [j6]Thomas Kelder, Martijn P. van Iersel
WikiPathways: building research communities on biological pathways. Nucleic Acids Res. 40(Database-Issue): 1301-1307 (2012) - [c2]Alasdair J. G. Gray, Sune Askjaer, Christian Y. A. Brenninkmeijer, Kees Burger, Christine Chichester, James M. Eales, Chris T. A. Evelo, Carole A. Goble, Paul Groth, Lee Harland, Antonis Loizou, Steve Pettifer, Rishi Ramgolam, Mark Thompson, Andra Waagmeester, Antony J. Williams:
The Pharmacology Workspace: A Platform for Drug Discovery. ICBO 2012 - [c1]Christian Y. A. Brenninkmeijer, Chris T. A. Evelo, Carole A. Goble, Alasdair J. G. Gray, Paul Groth, Steve Pettifer, Robert Stevens, Antony J. Williams, Egon L. Willighagen:
Scientific Lenses over Linked Data: An Approach to Support Task Specific Views of the Data. A Vision. LISC@ISWC 2012 - 2011
- [j5]Thomas Kelder, Lars M. T. Eijssen, Robert Kleemann, Marjan van Erk, Teake Kooistra, Chris T. A. Evelo:
Exploring pathway interactions in insulin resistant mouse liver. BMC Syst. Biol. 5: 127 (2011) - 2010
- [j4]Martijn P. van Iersel
The BridgeDb framework: standardized access to gene, protein and metabolite identifier mapping services. BMC Bioinform. 11: 5 (2010)
2000 – 2009
- 2008
- [j3]Martijn P. van Iersel
Presenting and exploring biological pathways with PathVisio. BMC Bioinform. 9 (2008) - 2007
- [j2]Stan Gaj, Arie van Erk, Rachel I. M. van Haaften, Chris T. A. Evelo:
Linking microarray reporters with protein functions. BMC Bioinform. 8 (2007) - 2006
- [j1]Rachel I. M. van Haaften, Blanche Schroen, Ben J. A. Janssen, Arie van Erk, Jacques J. M. Debets, Hubert J. M. Smeets, Jos F. M. Smits, Arthur van den Wijngaard, Yigal M. Pinto, Chris T. A. Evelo:
Biologically relevant effects of mRNA amplification on gene expression profiles. BMC Bioinform. 7: 200 (2006)
Coauthor Index
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