Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project (Q92726015)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

title

Progress on Identifying and Characterizing the Human Proteome: 2019 Metrics from the HUPO Human Proteome Project (English)

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1 May 2020

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1 May 2020

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Christopher M Overall

series ordinal

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1 May 2020

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1 May 2020

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1 May 2020

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1 May 2020

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1 May 2020

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1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Michael P Snyder

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

Fernando J Corrales

1 reference

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1 May 2020

Stephen Pennington

series ordinal

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1 May 2020

publication date

13 September 2019

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Journal of Proteome Research

1 May 2020

language of work

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1 May 2020

volume

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1 May 2020

issue

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1 May 2020

page(s)

4098-4107

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Proteomic and N-Terminomic TAILS Analyses of Human Alveolar Bone Proteins: Improved Protein Extraction Methodology and LysargiNase Digestion Strategies Increase Proteome Coverage and Missing Protein Identification

1 May 2020

cites work

1 reference

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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 3.0.

11 February 2021

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Blinded Testing of Function Annotation for uPE1 Proteins by I-TASSER/COFACTOR Pipeline Using the 2018-2019 Additions to neXtProt and the CAFA3 Challenge

11 February 2021

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Systematic assessment of antibody selectivity in plasma based on a resource of enrichment profiles

11 February 2021

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ProteinExplorer: A Repository-Scale Resource for Exploration of Protein Detection in Public Mass Spectrometry Data Sets

11 February 2021

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Toward Completion of the Human Proteome Parts List: Progress Uncovering Proteins That Are Missing or Have Unknown Function and Developing Analytical Methods

11 February 2021

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Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma

11 February 2021

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A deep proteome and transcriptome abundance atlas of 29 healthy human tissues

11 February 2021

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An allosteric MALT1 inhibitor is a molecular corrector rescuing function in an immunodeficient patient

11 February 2021

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TDP-43 extracted from frontotemporal lobar degeneration subject brains displays distinct aggregate assemblies and neurotoxic effects reflecting disease progression rates

11 February 2021

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Proteome-wide Tyrosine Phosphorylation Analysis Reveals Dysregulated Signaling Pathways in Ovarian Tumors

11 February 2021

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200+ Protein Concentrations in Healthy Human Blood Plasma: Targeted Quantitative SRM SIS Screening of Chromosomes 18, 13, Y, and the Mitochondrial Chromosome Encoded Proteome

11 February 2021

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Orchestration of protein acetylation as a toggle for cellular defense and virus replication

11 February 2021

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The PRIDE database and related tools and resources in 2019: improving support for quantification data

11 February 2021

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Improvement of Peptide Separation for Exploring the Missing Proteins Localized on Membranes

11 February 2021

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Enhanced validation of antibodies for research applications

11 February 2021

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The jPOST environment: an integrated proteomics data repository and database

11 February 2021

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Sequential Fractionation Strategy Identifies Three Missing Proteins in the Mitochondrial Proteome of Commonly Used Cell Lines

11 February 2021

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Chromosome 17 Missing Proteins: Recent Progress and Future Directions as Part of the neXt-MP50 Challenge

11 February 2021

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Multi-Proteases Combined with High-pH Reverse-Phase Separation Strategy Verified Fourteen Missing Proteins in Human Testis Tissue

11 February 2021

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Integration of transcriptomics and antibody-based proteomics for exploration of proteins expressed in specialized tissues

11 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6898754

Launching the C-HPP pilot project for functional characterization of identified proteins with no known function

11 February 2021

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Structure and Protein Interaction-Based Gene Ontology Annotations Reveal Likely Functions of Uncharacterized Proteins on Human Chromosome 17

11 February 2021

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iProX: an integrated proteome resource.

11 February 2021

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Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry

11 February 2021

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Subcellular Proteome Landscape of Human Embryonic Stem Cells Revealed Missing Membrane Proteins

11 February 2021

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ER-associated ubiquitin ligase HRD1 programs liver metabolism by targeting multiple metabolic enzymes

11 February 2021

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Exploring the Uncharacterized Human Proteome Using neXtProt

11 February 2021

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Large-Scale Reanalysis of Publicly Available HeLa Cell Proteomics Data in the Context of the Human Proteome Project

11 February 2021

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Integrated Dissection of Cysteine Oxidative Post-translational Modification Proteome During Cardiac Hypertrophy

11 February 2021

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Deep learning is combined with massive-scale citizen science to improve large-scale image classification

11 February 2021

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Deep Dive on the Proteome of Human Cerebrospinal Fluid: A Valuable Data Resource for Biomarker Discovery and Missing Protein Identification

11 February 2021

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Identification of Missing Proteins in Human Olfactory Epithelial Tissue by Liquid Chromatography-Tandem Mass Spectrometry

11 February 2021

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Progress on Identifying and Characterizing the Human Proteome: 2018 Metrics from the HUPO Human Proteome Project

11 February 2021

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=6898754

A Cloud-Based Metabolite and Chemical Prioritization System for the Biology/Disease-Driven Human Proteome Project

11 February 2021

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Co-regulatory networks of human serum proteins link genetics to disease

11 February 2021

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Identification of the Missing Protein Hyaluronan Synthase 1 in Human Mesenchymal Stem Cells Derived from Adipose Tissue or Umbilical Cord

11 February 2021

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Proteomic Architecture of Human Coronary and Aortic Atherosclerosis.

11 February 2021

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iMetaLab 1.0: a web platform for metaproteomics data analysis

11 February 2021

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11 February 2021

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Minimal Information About an Immuno-Peptidomics Experiment (MIAIPE).

11 February 2021

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Evaluation of NCI-7 Cell Line Panel as a Reference Material for Clinical Proteomics.

11 February 2021

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Germline Duplication of SNORA18L5 Increases Risk for HBV-related Hepatocellular Carcinoma by Altering Localization of Ribosomal Proteins and Decreasing Levels of p53.

11 February 2021

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Precision Profiling of the Cardiovascular Post-Translationally Modified Proteome: Where There Is a Will, There Is a Way

11 February 2021

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Urinary CE-MS peptide marker pattern for detection of solid tumors.

11 February 2021

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Systematic Protein Prioritization for Targeted Proteomics Studies through Literature Mining

11 February 2021

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Panorama Public: A Public Repository for Quantitative Data Sets Processed in Skyline

11 February 2021

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In Vivo Phosphoproteome Analysis Reveals Kinome Reprogramming in Hepatocellular Carcinoma.

11 February 2021

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Proteome Profiling of Diabetic Mellitus Patient Urine for Discovery of Biomarkers by Comprehensive MS-Based Proteomics

11 February 2021

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A Map of Protein-Metabolite Interactions Reveals Principles of Chemical Communication

11 February 2021

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11 February 2021

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The target landscape of clinical kinase drugs

11 February 2021

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Region and cell-type resolved quantitative proteomic map of the human heart.

11 February 2021

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The Human Odontoblast Cell Layer and Dental Pulp Proteomes and N-Terminomes

11 February 2021

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Progress on the HUPO Draft Human Proteome: 2017 Metrics of the Human Proteome Project.

11 February 2021

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A pathology atlas of the human cancer transcriptome

11 February 2021

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A subcellular map of the human proteome

11 February 2021

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Global analysis of glycoproteins identifies markers of endotoxin tolerant monocytes and GPR84 as a modulator of TNFα expression.

11 February 2021

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Loss-less Nano-fractionator for High Sensitivity, High Coverage Proteomics

11 February 2021

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The ProteomeXchange consortium in 2017: supporting the cultural change in proteomics public data deposition

11 February 2021

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The neXtProt knowledgebase on human proteins: 2017 update

11 February 2021

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Direct identification of clinically relevant neoepitopes presented on native human melanoma tissue by mass spectrometry

11 February 2021

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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

11 February 2021

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Metrics for the Human Proteome Project 2016: Progress on Identifying and Characterizing the Human Proteome, Including Post-Translational Modifications

11 February 2021

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Data-Driven Approach To Determine Popular Proteins for Targeted Proteomics Translation of Six Organ Systems

11 February 2021

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Metrics for the Human Proteome Project 2015: Progress on the Human Proteome and Guidelines for High-Confidence Protein Identification

11 February 2021

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State of the Human Proteome in 2014/2015 As Viewed through PeptideAtlas: Enhancing Accuracy and Coverage through the AtlasProphet

11 February 2021

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Trans-Proteomic Pipeline, a standardized data processing pipeline for large-scale reproducible proteomics informatics

11 February 2021

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Proteomics. Tissue-based map of the human proteome

11 February 2021

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Mass Spectrometry of Human Leukocyte Antigen Class I Peptidomes Reveals Strong Effects of Protein Abundance and Turnover on Antigen Presentation

11 February 2021

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LysargiNase mirrors trypsin for protein C-terminal and methylation-site identification

11 February 2021

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ProteomeXchange provides globally coordinated proteomics data submission and dissemination

11 February 2021

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Metrics for the Human Proteome Project 2013-2014 and strategies for finding missing proteins

11 February 2021

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N-linked glycosylation enrichment for in-depth cell surface proteomics of diffuse large B-cell lymphoma subtypes

11 February 2021

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A first step toward completion of a genome-wide characterization of the human proteome

11 February 2021

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Targeted data extraction of the MS/MS spectra generated by data-independent acquisition: a new concept for consistent and accurate proteome analysis

11 February 2021

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The human proteome project: Current state and future direction.

11 February 2021

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A uniform proteomics MS/MS analysis platform utilizing open XML file formats

11 February 2021

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PRIDE: the proteomics identifications database

11 February 2021

1 reference

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Integration with the human genome of peptide sequences obtained by high-throughput mass spectrometry

11 February 2021

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10.1021/ACS.JPROTEOME.9B00434

11 February 2021

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json

1 May 2020

PubMed publication ID

31430157

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:31430157%20AND%20SRC:MED&resulttype=core&format=json