The PRIDE database and related tools and resources in 2019: improving support for quantification data (Q58611633)

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English	The PRIDE database and related tools and resources in 2019: improving support for quantification data	scientific article

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6323896

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1 May 2020

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The PRIDE database and related tools and resources in 2019: improving support for quantification data (English)

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6323896

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database

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Yasset Perez-Riverol

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6323896

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Johannes Griss

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Gerhard Mayer

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Julian Uszkoreit

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Enrique Audain

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Andrew F Jarnuczak

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Alvis Brazma

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Juan Antonio Vizcaíno

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Manuel Bernal-Llinares

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6323896

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Suresh Hewapathirana

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6323896

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Deepti J Kundu

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Mathias Walzer

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6323896

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Martin Eisenacher

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Martin Eisenacher

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6323896

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Attila Csordas

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6323896

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Jingwen Bai

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6323896

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Avinash Inuganti

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6323896

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Enrique Pérez

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11

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6323896

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Julianus Pfeuffer

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Timo Sachsenberg

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Sule Yilmaz

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Shivani Tiwary

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Jürgen Cox

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Tobias Ternent

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English

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publication date

1 January 2019

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published in

Nucleic Acids Research

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47

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D1

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copyright license

Creative Commons Attribution 4.0 International

start time

5 November 2018

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April 2022 Public Data File from Crossref

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cites work

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How to submit MS proteomics data to ProteomeXchange via the PRIDE database

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Introducing the PRIDE Archive RESTful web services

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ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

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PIA: An Intuitive Protein Inference Engine with a Web-Based User Interface

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2016 update of the PRIDE database and its related tools

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Human Proteome Project Mass Spectrometry Data Interpretation Guidelines 2.1.

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In-depth analysis of protein inference algorithms using multiple search engines and well-defined metrics.

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Identifying ELIXIR Core Data Resources

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UniProt: the universal protein knowledgebase

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jPOSTrepo: an international standard data repository for proteomes

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OLS Client and OLS Dialog: Open source tools to annotate public omics datasets.

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https://pubmed.ncbi.nlm.nih.gov/30395289

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SQANTI: extensive characterization of long-read transcript sequences for quality control in full-length transcriptome identification and quantification

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30395289

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Identifiers

DOI

10.1093/NAR/GKY1106

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stated in

Europe PubMed Central

PMC publication ID

6323896

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1 May 2020

DBLP publication ID

journals/nar/Perez-RiverolCB19

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DBLP Dataset 2021-01-02

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28 January 2021

PMC publication ID

6323896

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Europe PubMed Central

PMC publication ID

6323896

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

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1 May 2020

PubMed publication ID

30395289

1 reference

stated in

Europe PubMed Central

PMC publication ID

6323896

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30395289%20AND%20SRC:MED&resulttype=core&format=json

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1 May 2020

 

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