Combining probabilistic alignments with read pair information improves accuracy of split-alignments (Q62496018)

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scientific article published on 01 November 2018

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English	Combining probabilistic alignments with read pair information improves accuracy of split-alignments	scientific article published on 01 November 2018

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instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

title

Combining probabilistic alignments with read pair information improves accuracy of split-alignments (English)

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

author

Naruki Yoshikawa

series ordinal

2

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

author name string

Anish M S Shrestha

series ordinal

1

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

Kiyoshi Asai

series ordinal

3

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

language of work or name

English

0 references

publication date

1 November 2018

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

published in

Bioinformatics

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

volume

34

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

issue

21

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

page(s)

3631-3637

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

copyright license

Creative Commons Attribution-NonCommercial 4.0 International

start time

22 May 2018

1 reference

stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

The diploid genome sequence of an individual human

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

YAHA: fast and flexible long-read alignment with optimal breakpoint detection

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DELLY: structural variant discovery by integrated paired-end and split-read analysis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

LUMPY: a probabilistic framework for structural variant discovery.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Resolving the complexity of the human genome using single-molecule sequencing

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Split-alignment of genomes finds orthologies more accurately.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BreakSeek: a breakpoint-based algorithm for full spectral range INDEL detection

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput determination of RNA structure by proximity ligation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

In Vivo Mapping of Eukaryotic RNA Interactomes Reveals Principles of Higher-Order Organization and Regulation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Simulation-based comprehensive benchmarking of RNA-seq aligners.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/29790902

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1093/BIOINFORMATICS/BTY398

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

DBLP publication ID

journals/bioinformatics/ShresthaYA18

1 reference

stated in

DBLP Dataset 2021-01-02

retrieved

28 January 2021

PMC publication ID

6198854

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

PubMed publication ID

29790902

1 reference

stated in

Europe PubMed Central

PMC publication ID

6198854

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29790902%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 March 2020

 

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