LUMPY: a probabilistic framework for structural variant discovery. (Q21999523)

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English	LUMPY: a probabilistic framework for structural variant discovery.	scientific article

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scholarly article

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Europe PubMed Central

PMC publication ID

4197822

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

title

LUMPY: a probabilistic framework for structural variant discovery (English)

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stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

author

Colby Chiang

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2

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Colby Chiang

author given names

Colby

author last names

Chiang

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Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

Aaron R Quinlan

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3

object named as

Aaron R Quinlan

author given names

Aaron R

author last names

Quinlan

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stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

author name string

Ryan M Layer

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1

author given names

Ryan M

author last names

Layer

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stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

Ira M Hall

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4

author given names

Ira M

author last names

Hall

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stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

language of work or name

English

0 references

publication date

26 June 2014

1 reference

stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

published in

Genome Biology

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stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

volume

15

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Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

issue

6

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Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

page(s)

R84

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Europe PubMed Central

PMC publication ID

4197822

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

cites work

DELLY: structural variant discovery by integrated paired-end and split-read analysis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

19 March 2017

Mapping copy number variation by population-scale genome sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

19 March 2017

Fast and accurate short read alignment with Burrows-Wheeler transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

19 March 2017

The Sequence Alignment/Map format and SAMtools

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

19 March 2017

CNVnator: an approach to discover, genotype, and characterize typical and atypical CNVs from family and population genome sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

19 March 2017

A framework for variation discovery and genotyping using next-generation DNA sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

7 April 2017

BEDTools: a flexible suite of utilities for comparing genomic features

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

7 April 2017

Fast and accurate long-read alignment with Burrows-Wheeler transform

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

7 April 2017

Pindel: a pattern growth approach to detect break points of large deletions and medium sized insertions from paired-end short reads

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

7 April 2017

YAHA: fast and flexible long-read alignment with optimal breakpoint detection

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

An integrative probabilistic model for identification of structural variation in sequencing data

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Simultaneous structural variation discovery among multiple paired-end sequenced genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

CREST maps somatic structural variation in cancer genomes with base-pair resolution.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Genome structural variation discovery and genotyping

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Discovery and genotyping of genome structural polymorphism by sequencing on a population scale

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Genome-wide mapping and assembly of structural variant breakpoints in the mouse genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Computational methods for discovering structural variation with next-generation sequencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

BreakDancer: an algorithm for high-resolution mapping of genomic structural variation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

12 September 2017

Detecting copy number variation with mated short reads

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4197822

retrieved

30 May 2018

Identifiers

DOI

10.1186/GB-2014-15-6-R84

1 reference

stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

arXiv ID

1210.2342

1 reference

stated in

Unpaywall

OpenCitations bibliographic resource ID

349156

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

349156

PMC publication ID

4197822

2 references

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

349156

stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

PubMed publication ID

24970577

1 reference

stated in

Europe PubMed Central

PMC publication ID

4197822

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24970577%20AND%20SRC:MED&resulttype=core&format=json

retrieved

21 March 2020

ResearchGate publication ID

232063328

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