Molecular Evolution of Tryptophan Hydroxylases in Vertebrates: A Comparative Genomic Survey (Q64115037)

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English	Molecular Evolution of Tryptophan Hydroxylases in Vertebrates: A Comparative Genomic Survey	article

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scholarly article

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Europe PubMed Central

PMC publication ID

6470480

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28 April 2020

title

Molecular Evolution of Tryptophan Hydroxylases in Vertebrates: A Comparative Genomic Survey (English)

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Europe PubMed Central

PMC publication ID

6470480

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retrieved

28 April 2020

main subject

Melatonin biosynthesis: the structure of serotonin N-acetyltransferase at 2.5 A resolution suggests a catalytic mechanism

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molecular evolution

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author

Xinxin You

series ordinal

5

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Europe PubMed Central

PMC publication ID

6470480

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30857219%20AND%20SRC:MED&resulttype=core&format=json

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28 April 2020

Daiji Endoh

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6

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Europe PubMed Central

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6470480

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28 April 2020

Qiong Shi

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8

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PMC publication ID

6470480

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28 April 2020

Chao Bian

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4

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Chao Bian

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6470480

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28 April 2020

author name string

Junmin Xu

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1

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PMC publication ID

6470480

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28 April 2020

Yanping Li

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2

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6470480

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28 April 2020

Yunyun Lv

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3

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6470480

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28 April 2020

Hiroki Teraoka

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7

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6470480

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28 April 2020

language of work or name

English

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publication date

8 March 2019

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Europe PubMed Central

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6470480

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28 April 2020

published in

Genes

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6470480

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28 April 2020

volume

10

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Europe PubMed Central

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6470480

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28 April 2020

issue

3

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PMC publication ID

6470480

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28 April 2020

page(s)

203

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copyright license

Creative Commons Attribution 4.0 International

start time

8 March 2019

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stated in

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Avian melatonin synthesis: photic and circadian regulation of serotonin N-acetyltransferase mRNA in the chicken pineal gland and retina.

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The spectrum of behaviors influenced by serotonin

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Advances in the molecular characterization of tryptophan hydroxylase

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PubMed

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12 December 2020

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Preservation of duplicate genes by complementary, degenerative mutations

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12 December 2020

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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Crystal structure and site-specific mutagenesis of pterin-bound human phenylalanine hydroxylase

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Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution.

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TEXshade: shading and labeling of multiple sequence alignments using LATEX2 epsilon.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

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Tetrahydropterin-dependent amino acid hydroxylases

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PubMed

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12 December 2020

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Characterization of the chicken serotonin N-acetyltransferase gene. Activation via clock gene heterodimer/E box interaction

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PubMed

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12 December 2020

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Statistical methods for detecting molecular adaptation

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Conformation of the substrate and pterin cofactor bound to human tryptophan hydroxylase. Important role of Phe313 in substrate specificity

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PubMed

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12 December 2020

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Adaptive protein evolution in Drosophila

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12 December 2020

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Crystal structure of the ternary complex of the catalytic domain of human phenylalanine hydroxylase with tetrahydrobiopterin and 3-(2-thienyl)-L-alanine, and its implications for the mechanism of catalysis and substrate activation

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Synthesis of serotonin by a second tryptophan hydroxylase isoform

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Genome duplication, a trait shared by 22000 species of ray-finned fish

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PubMed

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12 December 2020

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SWISS-MODEL: An automated protein homology-modeling server

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Aromatic L-amino acid decarboxylase

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning of two tryptophan hydroxylase genes expressed in the diencephalon of the developing zebrafish brain

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Evolving protein functional diversity in new genes of Drosophila

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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inferred from PubMed ID database lookup

Autocrine/paracrine regulation of the growth of the biliary tree by the neuroendocrine hormone serotonin.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Bayes empirical bayes inference of amino acid sites under positive selection

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

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Automated generation of heuristics for biological sequence comparison

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Engineering of protease variants exhibiting high catalytic activity and exquisite substrate selectivity.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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inferred from PubMed ID database lookup

From 2R to 3R: evidence for a fish-specific genome duplication (FSGD).

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Designed divergent evolution of enzyme function

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12 December 2020

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inferred from PubMed ID database lookup

Use of antidepressants and risk of colorectal cancer: a nested case-control study

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Platelet-derived serotonin mediates liver regeneration

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional domains of human tryptophan hydroxylase 2 (hTPH2).

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

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Age and biogeography of major clades in sturgeons and paddlefishes (Pisces: Acipenseriformes).

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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inferred from PubMed ID database lookup

Maternal serotonin is crucial for murine embryonic development

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Platelets and platelet-derived serotonin promote tissue repair after normothermic hepatic ischemia in mice

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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Positive selection for single amino acid change promotes substrate discrimination of a plant volatile-producing enzyme

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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PAML 4: phylogenetic analysis by maximum likelihood

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

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The medaka draft genome and insights into vertebrate genome evolution

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PubMed

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12 December 2020

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Accelerated gene evolution and subfunctionalization in the pseudotetraploid frog Xenopus laevis

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Serotonin mediates oxidative stress and mitochondrial toxicity in a murine model of nonalcoholic steatohepatitis.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation and stabilization of human tryptophan hydroxylase 2 by phosphorylation and 14-3-3 binding.

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

BEAST: Bayesian evolutionary analysis by sampling trees

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Serotonin regulates macrophage-mediated angiogenesis in a mouse model of colon cancer allografts

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Positions under positive selection--key for selectivity and potency of scorpion alpha-toxins

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Origins, evolution, and phenotypic impact of new genes.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Tyrosine hydroxylase and regulation of dopamine synthesis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ProtTest 3: fast selection of best-fit models of protein evolution

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Using the Basic Local Alignment Search Tool (BLAST)

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The serotonergic system in fish

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome Evolution and Meiotic Maps by Massively Parallel DNA Sequencing: Spotted Gar, an Outgroup for the Teleost Genome Duplication

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A synthetic rainbow trout linkage map provides new insights into the salmonid whole genome duplication and the conservation of synteny among teleosts

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sea lamprey tryptophan hydroxylase: new insight into the evolution of the serotonergic system of vertebrates

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequencing of Pax6 loci from the elephant shark reveals a family of Pax6 genes in vertebrate genomes, forged by ancient duplications and divergences

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural and functional evolution of positively selected sites in pine glutathione S-transferase enzyme family

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A well-constrained estimate for the timing of the salmonid whole genome duplication reveals major decoupling from species diversification

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficient de novo assembly of highly heterozygous genomes from whole-genome shotgun short reads.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Whole-genome duplication in teleost fishes and its evolutionary consequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome sequence and genetic diversity of the common carp, Cyprinus carpio

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular Evolution of Aralkylamine N-Acetyltransferase in Fish: A Genomic Survey

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The spotted gar genome illuminates vertebrate evolution and facilitates human-teleost comparisons

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Atlantic salmon genome provides insights into rediploidization

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DBG2OLC: Efficient Assembly of Large Genomes Using Long Erroneous Reads of the Third Generation Sequencing Technologies

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Comparative Genomic and Transcriptomic Survey Provides Novel Insights into N-Acetylserotonin Methyltransferase (ASMT) in Fish.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Divergent Genomes of Teleosts

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Comparative Genomic Survey Provides Novel Insights into Molecular Evolution of l-Aromatic Amino Acid Decarboxylase in Vertebrates.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/30857219

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cloning of two tryptophan hydroxylase genes expressed in the diencephalon of the developing zebrafish brain

1 reference

stated in

COCI

retrieved

30 December 2023

reference URL

https://opencitations.net/index/api/v1/citations/10.1016/S1567-133X(02)00056-X

Identifiers

DOI

10.3390/GENES10030203

1 reference

stated in

Europe PubMed Central

PMC publication ID

6470480

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30857219%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

PMC publication ID

6470480

1 reference

stated in

Europe PubMed Central

PMC publication ID

6470480

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30857219%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

PubMed publication ID

30857219

1 reference

stated in

Europe PubMed Central

PMC publication ID

6470480

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30857219%20AND%20SRC:MED&resulttype=core&format=json

retrieved

28 April 2020

 

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