Origins, evolution, and phenotypic impact of new genes. (Q34153587)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

review article

1 reference

title

Origins, evolution, and phenotypic impact of new genes (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

Henrik Kaessmann

1 reference

PubMed publication ID

20651121

31 July 2017

publication date

22 July 2010

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

volume

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

issue

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

page(s)

1313-1326

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

The evolution of gene duplications: classifying and distinguishing between models

8 February 2020

cites work

1 reference

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ZBED6, a novel transcription factor derived from a domesticated DNA transposon regulates IGF2 expression and muscle growth

5 July 2018

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Sequencing technologies - the next generation

5 July 2018

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Identification of an endogenous retroviral envelope gene with fusogenic activity and placenta-specific expression in the rabbit: a new "syncytin" in a third order of mammals

5 July 2018

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Stage-specific expression profiling of Drosophila spermatogenesis suggests that meiotic sex chromosome inactivation drives genomic relocation of testis-expressed genes

5 July 2018

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A functional mouse retroposed gene Rps23r1 reduces Alzheimer's beta-amyloid levels and tau phosphorylation

5 July 2018

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The origins and impact of primate segmental duplications

5 July 2018

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5 July 2018

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Emergence of a new gene from an intergenic region

5 July 2018

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Recent de novo origin of human protein-coding genes

5 July 2018

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The evolution of human segmental duplications and the core duplicon hypothesis

5 July 2018

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The evolutionary significance of ancient genome duplications

5 July 2018

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5 July 2018

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An expressed fgf4 retrogene is associated with breed-defining chondrodysplasia in domestic dogs

5 July 2018

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Syncytin-A knockout mice demonstrate the critical role in placentation of a fusogenic, endogenous retrovirus-derived, envelope gene

5 July 2018

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Rapid repetitive element-mediated expansion of piRNA clusters in mammalian evolution

5 July 2018

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Rapid evolution of mammalian X-linked testis microRNAs

5 July 2018

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Small RNAs as guardians of the genome

5 July 2018

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Origins and Mechanisms of miRNAs and siRNAs

5 July 2018

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Evolution and functions of long noncoding RNAs

5 July 2018

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Is genetic evolution predictable?

5 July 2018

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Long non-coding RNAs: insights into functions

5 July 2018

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The life and death of gene families

5 July 2018

1 reference

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Origin of primate orphan genes: a comparative genomics approach

5 July 2018

1 reference

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RNA-based gene duplication: mechanistic and evolutionary insights

5 July 2018

1 reference

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On the origin and evolution of new genes--a genomic and experimental perspective

5 July 2018

1 reference

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RNA-Seq: a revolutionary tool for transcriptomics

5 July 2018

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Turning a hobby into a job: how duplicated genes find new functions

5 July 2018

1 reference

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Repeated horizontal transfer of a DNA transposon in mammals and other tetrapods

5 July 2018

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Mitochondrial targeting adaptation of the hominoid-specific glutamate dehydrogenase driven by positive Darwinian selection

5 July 2018

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Horizontal gene transfer in eukaryotic evolution

5 July 2018

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On the origin of new genes in Drosophila

5 July 2018

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Birth and rapid subcellular adaptation of a hominoid-specific CDC14 protein

5 July 2018

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Massive Horizontal Gene Transfer in Bdelloid Rotifers

5 July 2018

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The evolution of courtship behaviors through the origination of a new gene in Drosophila

5 July 2018

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Mouse segmental duplication and copy number variation

5 July 2018

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De novo origination of a new protein-coding gene in Saccharomyces cerevisiae

5 July 2018

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Conservation of small RNA pathways in platypus

5 July 2018

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Pseudogene-derived small interfering RNAs regulate gene expression in mouse oocytes

5 July 2018

1 reference

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Endogenous siRNAs from naturally formed dsRNAs regulate transcripts in mouse oocytes

5 July 2018

1 reference

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Chromosomal gene movements reflect the recent origin and biology of therian sex chromosomes

5 July 2018

1 reference

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Retrotransposition as a source of new promoters

5 July 2018

1 reference

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Functional diversification of duplicate genes through subcellular adaptation of encoded proteins

5 July 2018

1 reference

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TRIMCyp expression in Old World primates Macaca nemestrina and Macaca fascicularis

5 July 2018

1 reference

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Role of retrotransposon-derived imprinted gene, Rtl1, in the feto-maternal interface of mouse placenta

5 July 2018

1 reference

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DNA transposons and the evolution of eukaryotic genomes

5 July 2018

1 reference

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In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica

5 July 2018

1 reference

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Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes

5 July 2018

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The birth of new exons: mechanisms and evolutionary consequences

5 July 2018

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Population bottlenecks as a potential major shaping force of human genome architecture

5 July 2018

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A novel testis ubiquitin-binding protein gene arose by exon shuffling in hominoids

5 July 2018

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Prominent use of distal 5' transcription start sites and discovery of a large number of additional exons in ENCODE regions

5 July 2018

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Origin and evolution of human microRNAs from transposable elements.

5 July 2018

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Rapid evolution of an X-linked microRNA cluster in primates

5 July 2018

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Meiotic sex chromosome inactivation

5 July 2018

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Comparative genomics reveals a constant rate of origination and convergent acquisition of functional retrogenes in Drosophila

5 July 2018

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Emergence of primate genes by retrotransposon-mediated sequence transduction

5 July 2018

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Turning junk into gold: domestication of transposable elements and the creation of new genes in eukaryotes

5 July 2018

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The Xist RNA gene evolved in eutherians by pseudogenization of a protein-coding gene

5 July 2018

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Novel genes derived from noncoding DNA in Drosophila melanogaster are frequently X-linked and exhibit testis-biased expression

5 July 2018

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Noncoding RNAs in the mammalian central nervous system.

5 July 2018

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Evolutionary fate of retroposed gene copies in the human genome

5 July 2018

1 reference

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Primate microRNAs miR-220 and miR-492 lie within processed pseudogenes

5 July 2018

1 reference

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The expansion of the metazoan microRNA repertoire

5 July 2018

1 reference

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Tandem chimerism as a means to increase protein complexity in the human genome

5 July 2018

1 reference

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Transcription-mediated gene fusion in the human genome

5 July 2018

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Deletion of Peg10, an imprinted gene acquired from a retrotransposon, causes early embryonic lethality

5 July 2018

1 reference

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Emergence of young human genes after a burst of retroposition in primates

5 July 2018

1 reference

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A scan for positively selected genes in the genomes of humans and chimpanzees

5 July 2018

1 reference

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Chromatin remodelling and epigenetic features of germ cells

5 July 2018

1 reference

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Complex genomic rearrangements lead to novel primate gene function

5 July 2018

1 reference

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Evidence for widespread degradation of gene control regions in hominid genomes

5 July 2018

1 reference

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Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution

5 July 2018

1 reference

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Sexual selection, genetic conflict, selfish genes, and the atypical patterns of gene expression in spermatogenic cells

5 July 2018

1 reference

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Evolving protein functional diversity in new genes of Drosophila

5 July 2018

1 reference

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Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux

5 July 2018

1 reference

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The mouse juvenile spermatogonial depletion (jsd) phenotype is due to a mutation in the X-derived retrogene, mUtp14b

5 July 2018

1 reference

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An X-to-autosome retrogene is required for spermatogenesis in mice

5 July 2018

1 reference

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Cyclophilin A retrotransposition into TRIM5 explains owl monkey resistance to HIV-1

5 July 2018

1 reference

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Extensive gene traffic on the mammalian X chromosome

5 July 2018

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The origin of new genes: glimpses from the young and old

5 July 2018

1 reference

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Lateral Gene Transfer and the Origins of Prokaryotic Groups

5 July 2018

1 reference

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Dntf-2r, a young Drosophila retroposed gene with specific male expression under positive Darwinian selection.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

The evolutionary demography of duplicate genes

5 July 2018

1 reference

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Comparison of the genomes of human and mouse lays the foundation of genome zoology

5 July 2018

1 reference

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The Tre2 (USP6) oncogene is a hominoid-specific gene

5 July 2018

1 reference

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Retroposed new genes out of the X in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

An endogenous hybrid mRNA encodes TWE-PRIL, a functional cell surface TWEAK-APRIL fusion protein

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Recent segmental duplications in the human genome

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Unique chromatin remodeling and transcriptional regulation in spermatogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Adaptive evolution of a duplicated pancreatic ribonuclease gene in a leaf-eating monkey

5 July 2018

1 reference

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Origin of sphinx, a young chimeric RNA gene in Drosophila melanogaster

5 July 2018

1 reference

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Positive selection of a gene family during the emergence of humans and African apes

5 July 2018

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A possible meiotic function of the peculiar patterns of gene expression in mammalian spermatogenic cells

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Fusion of the human gene for the polyubiquitination coeffector UEV1 with Kua, a newly identified gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Human LINE retrotransposons generate processed pseudogenes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Syncytin is a captive retroviral envelope protein involved in human placental morphogenesis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

5 July 2018

Vertebrate pseudogenes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

RNAs from all categories generate retrosequences that may be exapted as novel genes or regulatory elements

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

A second gene encoding the mouse proteasome activator PA28beta subunit is part of a LINE1 element and is driven by a LINE1 promoter

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Preservation of duplicate genes by complementary, degenerative mutations

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Exon shuffling by L1 retrotransposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Gene amplification and genomic plasticity in prokaryotes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Human L1 retrotransposon encodes a conserved endonuclease required for retrotransposition

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Natural Selection and the Origin of jingwei , a Chimeric Processed Functional Gene in Drosophila

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Human testis-specific PGK gene lacks introns and possesses characteristics of a processed gene

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Retroposons--seeds of evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Reverse Transcriptase Encoded by a Human Transposable Element

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

RNA-mediated transfer of the gene coxII from the mitochondrion to the nucleus during flowering plant evolution

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

5 July 2018

Evolution and tinkering

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

The emergence of new genes on the young therian X.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Extensive structural renovation of retrogenes in the evolution of the Populus genome

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Comparative analysis of structural diversity and sequence evolution in plant mitochondrial genes transferred to the nucleus

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

High rate of chimeric gene origination by retroposition in plant genomes

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Parallel adaptive origins of digestive RNases in Asian and African leaf monkeys

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

Mammalian microRNAs derived from genomic repeats

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

The structure and evolution of centromeric transition regions within the human genome

28 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2945180

So much "junk" DNA in our genome

28 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20651121

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Evolutionary origin and functions of retrogene introns

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/20651121

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Origin of life: The RNA world

1 reference

4 November 2023

https://opencitations.net/index/coci/api/v1/citations/10.1038/319618A0

Identifiers

DOI

10.1101/GR.101386.109

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json

8 February 2020

PubMed publication ID

20651121

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:20651121%20AND%20SRC:MED&resulttype=core&format=json