Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex (Q64066717)

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scientific article published on 05 February 2019

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English	Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex	scientific article published on 05 February 2019

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22 April 2020

Activation of the Endonuclease that Defines mRNA 3' Ends Requires Incorporation into an 8-Subunit Core Cleavage and Polyadenylation Factor Complex (English)

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22 April 2020

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polyadenylation

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22 April 2020

Gianluca Degliesposti

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Lori Anne Passmore

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22 April 2020

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Vytautė Boreikaitė

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Ananthanarayanan Kumar

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Ana Casañal

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Peter Kubík

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Sarah Maslen

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Angelica Mariani

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Ottilie von Loeffelholz

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Mathias Girbig

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Mark Skehel

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22 April 2020

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22 April 2020

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22 April 2020

1217-1231.e11

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22 April 2020

RNA sequence containing hexanucleotide AAUAAA directs efficient mRNA polyadenylation in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA processing generates the mature 3' end of yeast CYC1 messenger RNA in vitro

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The sequence 5'-AAUAAA-3'forms parts of the recognition site for polyadenylation of late SV40 mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Saturation mutagenesis of a polyadenylation signal reveals a hexanucleotide element essential for mRNA 3' end formation in Saccharomyces cerevisiae.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signals sufficient for 3'-end formation of yeast mRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential yeast protein with unexpected similarity to subunits of mammalian cleavage and polyadenylation specificity factor (CPSF).

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence similarity between the 73-kilodalton protein of mammalian CPSF and a subunit of yeast polyadenylation factor I

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Hrp1, a sequence-specific RNA-binding protein that shuttles between the nucleus and the cytoplasm, is required for mRNA 3′-end formation in yeast

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Control of cleavage site selection during mRNA 3' end formation by a yeast hnRNP.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Arginine methylation and binding of Hrp1p to the efficiency element for mRNA 3'-end formation.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Pta1, a component of yeast CF II, is required for both cleavage and poly(A) addition of mRNA precursor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evaluation of chemiluminescent estradiol conjugates by using a surface plasmon resonance detector

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct roles of two Yth1p domains in 3'-end cleavage and polyadenylation of yeast pre-mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fip1 regulates the activity of Poly(A) polymerase through multiple interactions

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Five subunits are required for reconstitution of the cleavage and polyadenylation activities of Saccharomyces cerevisiae cleavage factor I.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of polyadenylation sites in yeast pre-mRNAs by cleavage and polyadenylation factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electrostatics of nanosystems: application to microtubules and the ribosome

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional dissection of the zinc finger and flanking domains of the Yth1 cleavage/polyadenylation factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Organization and function of APT, a subcomplex of the yeast cleavage and polyadenylation factor involved in the formation of mRNA and small nucleolar RNA 3'-ends

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence that polyadenylation factor CPSF-73 is the mRNA 3' processing endonuclease.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PDB2PQR: an automated pipeline for the setup of Poisson-Boltzmann electrostatics calculations

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Recognition of RNA polymerase II carboxy-terminal domain by 3'-RNA-processing factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UCSF Chimera--a visualization system for exploratory research and analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The yeast Rat1 exonuclease promotes transcription termination by RNA polymerase II.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A CPSF-73 homologue is required for cell cycle progression but not cell growth and interacts with a protein having features of CPSF-100

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative proteomic analysis by accurate mass retention time pairs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated electron microscope tomography using robust prediction of specimen movements

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Symplekin and multiple other polyadenylation factors participate in 3'-end maturation of histone mRNAs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Very fast empirical prediction and rationalization of protein pKa values

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DWNN, a novel ubiquitin-like domain, implicates RBBP6 in mRNA processing and ubiquitin-like pathways.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Grabbing the message: structural basis of mRNA 3'UTR recognition by Hrp1

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EMAN2: an extensible image processing suite for electron microscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C-terminal domains of vertebrate CstF-64 and its yeast orthologue Rna15 form a new structure critical for mRNA 3'-end processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polyadenylation factor CPSF-73 is the pre-mRNA 3'-end-processing endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of a nucleotide-bound Clp1-Pcf11 polyadenylation factor

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inference of macromolecular assemblies from crystalline state

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Iterative model building, structure refinement and density modification with the PHENIX AutoBuild wizard

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Protein factors in pre-mRNA 3'-end processing.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MultiBac: multigene baculovirus-based eukaryotic protein complex production

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of Yeast Poly(A) Polymerase in Complex with a Peptide from Fip1, an Intrinsically Disordered Protein † ‡

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

ProteoWizard: open source software for rapid proteomics tools development

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular architecture of the human pre-mRNA 3' processing complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phasercrystallographic software

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MolProbity: all-atom structure validation for macromolecular crystallography

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure of the Rna15 RRM-RNA complex reveals the molecular basis of GU specificity in transcriptional 3'-end processing factors

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

PHENIX: a comprehensive Python-based system for macromolecular structure solution

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Features and development of Coot

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Novel protein-protein contacts facilitate mRNA 3'-processing signal recognition by Rna15 and Hrp1

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cleavable cross-linker for protein structure analysis: reliable identification of cross-linking products by tandem MS.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Locked tether formation by cooperative folding of Rna14p monkeytail and Rna15p hinge domains in the yeast CF IA complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The utility of hydrogen/deuterium exchange mass spectrometry in biopharmaceutical comparability studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Ending the message: poly(A) signals then and now

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The hunt for the 3' endonuclease

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Signals for pre-mRNA cleavage and polyadenylation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstitution of CF IA from overexpressed subunits reveals stoichiometry and provides insights into molecular topology

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

StavroX--a software for analyzing crosslinked products in protein interaction studies

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The P-loop domain of yeast Clp1 mediates interactions between CF IA and CPF factors in pre-mRNA 3' end formation

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the Rna14-Rna15 complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Linking Crystallographic Model and Data Quality

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RELION: implementation of a Bayesian approach to cryo-EM structure determination

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

How good are my data and what is the resolution?

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RNA polymerase II termination involves C-terminal-domain tyrosine dephosphorylation by CPF subunit Glc7

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis for ATP loss by Clp1p in a G135R mutant protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Delineating the structural blueprint of the pre-mRNA 3'-end processing machinery

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficient mRNA polyadenylation requires a ubiquitin-like domain, a zinc knuckle, and a RING finger domain, all contained in the Mpe1 protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Transcriptome Maps of mRNP Biogenesis Factors Define Pre-mRNA Recognition

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Automated assignment of MS/MS cleavable cross-links in protein 3D-structure analysis

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Reconstitution of CPSF active in polyadenylation: recognition of the polyadenylation signal by WDR33.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3' UTRs

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Ssu72 phosphatase mediates the RNA polymerase II initiation-elongation transition

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Electron microscopy: Ultrastable gold substrates for electron cryomicroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The end of the message: multiple protein-RNA interactions define the mRNA polyadenylation site

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The HADDOCK2.2 Web Server: User-Friendly Integrative Modeling of Biomolecular Complexes.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gctf: Real-time CTF determination and correction

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

biGBac enables rapid gene assembly for the expression of large multisubunit protein complexes

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A global genetic interaction network maps a wiring diagram of cellular function

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The C terminus of Pcf11 forms a novel zinc-finger structure that plays an essential role in mRNA 3'-end processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MotionCor2: anisotropic correction of beam-induced motion for improved cryo-electron microscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Architecture of the human interactome defines protein communities and disease networks

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Measuring the effects of particle orientation to improve the efficiency of electron cryomicroscopy.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Distinct roles of Pcf11 zinc-binding domains in pre-mRNA 3'-end processing

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cryo-electron microscopy snapshots of the spliceosome: structural insights into a dynamic ribonucleoprotein machine.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Architecture of eukaryotic mRNA 3'-end processing machinery

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular basis for the recognition of the human AAUAAA polyadenylation signal.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural insights into the assembly and polyA signal recognition mechanism of the human CPSF complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural basis of AAUAAA polyadenylation signal recognition by the human CPSF complex.

1 reference

https://pubmed.ncbi.nlm.nih.gov/30737185

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.MOLCEL.2018.12.023

1 reference

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22 April 2020

PMC publication ID

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Europe PubMed Central

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22 April 2020

PubMed publication ID

1 reference

Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:30737185%20AND%20SRC:MED&resulttype=core&format=json

22 April 2020

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