Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs (Q51163996)

31 March 2018

title

Vernalization-Triggered Intragenic Chromatin Loop Formation by Long Noncoding RNAs (English)

1 reference

31 March 2018

1 reference

Dong-Hwan Kim

1 reference

31 March 2018

Sibum Sung

series ordinal

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31 March 2018

language of work or name

English

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publication date

23 January 2017

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31 March 2018

published in

Developmental Cell

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31 March 2018

volume

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31 March 2018

issue

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31 March 2018

page(s)

302-312.e4

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31 March 2018

Epigenomic Diversity in a Global Collection of Arabidopsis thaliana Accessions

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A gene loop containing the floral repressor FLC is disrupted in the early phase of vernalization

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22 May 2018

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22 May 2018

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YY1 tethers Xist RNA to the inactive X nucleation center

22 May 2018

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Vernalization-repression of Arabidopsis FLC requires promoter sequences but not antisense transcripts.

22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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22 May 2018

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Diversity of Polycomb group complexes in plants: same rules, different players?

22 May 2018

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Vernalization: winter and the timing of flowering in plants

22 May 2018

1 reference

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Long noncoding RNAs: functional surprises from the RNA world

22 May 2018

1 reference

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22 May 2018

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A PHD-polycomb repressive complex 2 triggers the epigenetic silencing of FLC during vernalization

22 May 2018

1 reference

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22 May 2018

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Polycomb response elements mediate the formation of chromosome higher-order structures in the bithorax complex.

22 May 2018

1 reference

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Quantitative analysis of chromosome conformation capture assays (3C-qPCR).

22 May 2018

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Functional demarcation of active and silent chromatin domains in human HOX loci by noncoding RNAs

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

A PHD finger protein involved in both the vernalization and photoperiod pathways in Arabidopsis.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Epigenetic maintenance of the vernalized state in Arabidopsis thaliana requires LIKE HETEROCHROMATIN PROTEIN 1.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Genome-wide identification and testing of superior reference genes for transcript normalization in Arabidopsis

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

A strategy for probing the function of noncoding RNAs finds a repressor of NFAT

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Epigenetic control of plant development by Polycomb-group proteins.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Vernalization requires epigenetic silencing of FLC by histone methylation

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

The Polycomb-group protein MEDEA regulates seed development by controlling expression of the MADS-box gene PHERES1.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

The VERNALIZATION 2 gene mediates the epigenetic regulation of vernalization in Arabidopsis.

22 May 2018

1 reference

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FLOWERING LOCUS C encodes a novel MADS domain protein that acts as a repressor of flowering

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Noncoding transcription by alternative RNA polymerases dynamically regulates an auxin-driven chromatin loop.

22 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

A distal CCAAT/NUCLEAR FACTOR Y complex promotes chromatin looping at the FLOWERING LOCUS T promoter and regulates the timing of flowering in Arabidopsis

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

The catalytic subunit of Arabidopsis DNA polymerase α ensures stable maintenance of histone modification.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Cold-induced silencing by long antisense transcripts of an Arabidopsis Polycomb target

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Studying physical chromatin interactions in plants using Chromosome Conformation Capture (3C).

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Mechanisms of gene repression by vernalization in Arabidopsis.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Vernalization-induced trimethylation of histone H3 lysine 27 at FLC is not maintained in mitotically quiescent cells

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

The PHD finger protein VRN5 functions in the epigenetic silencing of Arabidopsis FLC.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Vernalization in Arabidopsis thaliana is mediated by the PHD finger protein VIN3.

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Quantitative Modulation of Polycomb Silencing Underlies Natural Variation in Vernalization

14 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5303624

Vernalization-mediated VIN3 Induction Overcomes the LIKE-HETEROCHROMATIN PROTEIN1/POLYCOMB REPRESSION COMPLEX2-mediated epigenetic repression

30 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28132848

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The timing of flowering

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/28132848

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.DEVCEL.2016.12.021

1 reference

31 March 2018

release_7boytrmfcrf6no3el7yi6wyf4q

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7boytrmfcrf6no3el7yi6wyf4q

mapped directly with Wikidata item

24 November 2022

based on heuristic

PMC publication ID

5303624

1 reference

31 March 2018

PubMed publication ID

28132848

1 reference

31 March 2018