Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum) (Q57671648)

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scientific article published on 21 March 2007

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English	Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum)	scientific article published on 21 March 2007

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PubMed publication ID

17375323

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27 December 2019

title

Differential impact of retrotransposon populations on the genome of allotetraploid tobacco (Nicotiana tabacum) (English)

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PubMed publication ID

17375323

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27 December 2019

main subject

Nicotiana tabacum

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allotetraploid

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based on heuristic

inferred from title

allotetraploidy

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author

Ales Kovarik

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6

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PubMed publication ID

17375323

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27 December 2019

Andrew R. Leitch

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7

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PubMed publication ID

17375323

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27 December 2019

Corinne Mhiri

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9

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17375323

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27 December 2019

author name string

Maud Petit

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1

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17375323

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Emilie Julio

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3

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17375323

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27 December 2019

Charles Poncet

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4

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17375323

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François Dorlhac de Borne

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5

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17375323

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Marie-Angèle Grandbastien

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8

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17375323

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K Yoong Lim

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2

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17375323

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publication date

21 March 2007

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17375323

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27 December 2019

published in

Molecular Genetics and Genomics

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17375323

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27 December 2019

volume

278

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17375323

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27 December 2019

issue

1

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17375323

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27 December 2019

page(s)

1-15

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27 December 2019

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The evolutionary analysis of the Tnt1 retrotransposon in Nicotiana species reveals the high variability of its regulatory sequences

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Transcriptional activation of retrotransposons alters the expression of adjacent genes in wheat

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12 December 2020

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Tnt1, a mobile retroviral-like transposable element of tobacco isolated by plant cell genetics

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LTR retrotransposons and flowering plant genome size: emergence of the increase/decrease model

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Mechanisms of recent genome size variation in flowering plants

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Rapid isolation of plant Ty1-copia group retrotransposon LTR sequences for molecular marker studies

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12 December 2020

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Rapid evolution of parental rDNA in a synthetic tobacco allotetraploid line

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12 December 2020

based on heuristic

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Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

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12 December 2020

based on heuristic

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AFLP: a new technique for DNA fingerprinting

1 reference

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12 December 2020

based on heuristic

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Novel patterns of gene expression in polyploid plants

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12 December 2020

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Evolution of interspersed repetitive elements in Gossypium (Malvaceae)

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12 December 2020

based on heuristic

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The origin and evolution of geminivirus-related DNA sequences in Nicotiana.

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12 December 2020

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Dispersed repetitive DNA has spread to new genomes since polyploid formation in cotton

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12 December 2020

based on heuristic

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Organization and transcription of the gene family encoding chlorophyll a/b-binding proteins in Nicotiana sylvestris.

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12 December 2020

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Undermethylation associated with retroelement activation and chromosome remodelling in an interspecific mammalian hybrid

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12 December 2020

based on heuristic

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Dynamic changes in the distribution of a satellite homologous to intergenic 26-18S rDNA spacer in the evolution of Nicotiana

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae

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PubMed

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12 December 2020

based on heuristic

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Development of SCAR markers linked to three disease resistances based on AFLP within Nicotiana tabacum L.

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12 December 2020

based on heuristic

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Extensive alterations in DNA methylation and transcription in rice caused by introgression from Zizania latifolia

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https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Epigenetic phenomena and the evolution of plant allopolyploids

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Long-term genome diploidization in allopolyploid Nicotiana section Repandae (Solanaceae)

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Formation of Solo-LTRs Through Unequal Homologous Recombination Counterbalances Amplifications of LTR Retrotransposons in Rice Oryza sativa L

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The genomic organization of retrotransposons in Brassica oleracea

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular cytogenetic analyses and phylogenetic studies in the Nicotiana section Tomentosae

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene conversion of ribosomal DNA in Nicotiana tabacum is associated with undermethylated, decondensed and probably active gene units

1 reference

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrolyc1 subfamilies defined by different U3 LTR regulatory regions in the Lycopersicon genus

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposons of the Tnt1B family are mobile in Nicotiana plumbaginifolia and can induce alternative splicing of the host gene upon insertion.

1 reference

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A distinct endogenous pararetrovirus family in Nicotiana tomentosiformis, a diploid progenitor of polyploid tobacco

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A contiguous 66-kb barley DNA sequence provides evidence for reversible genome expansion.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Analyses of LTR-retrotransposon structures reveal recent and rapid genomic DNA loss in rice

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mobilization of the active MITE transposons mPing and Pong in rice by introgression from wild rice (Zizania latifolia Griseb.).

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Activation of tobacco retrotransposons during tissue culture.

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Rapid genomic changes in interspecific and intergeneric hybrids and allopolyploids of Triticeae

1 reference

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quasispecies in retrotransposons: a role for sequence variability in Tnt1 evolution

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genomic changes in synthetic Arabidopsis polyploids

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chloroplast genome of Nicotiana sylvestris and Nicotiana tomentosiformis: complete sequencing confirms that the Nicotiana sylvestris progenitor is the maternal genome donor of Nicotiana tabacum

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Phylogenetic relationships in Nicotiana (Solanaceae) inferred from multiple plastid DNA regions

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene loss, silencing and activation in a newly synthesized wheat allotetraploid.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome evolution of wild barley (Hordeum spontaneum) by BARE-1 retrotransposon dynamics in response to sharp microclimatic divergence.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The origin of tobacco's T genome is traced to a particular lineage within Nicotiana tomentosiformis (Solanaceae).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular basis of evolutionary events that shaped the hardness locus in diploid and polyploid wheat species (Triticum and Aegilops).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrolycl-1, a member of the tntl retrotransposon super-family in the Lycopersicon peruvianum genome.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preferential elimination of repeated DNA sequences from the paternal, Nicotiana tomentosiformis genome donor of a synthetic, allotetraploid tobacco

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The chromosomal distributions of Ty1-copia group retrotransposable elements in higher plants and their implications for genome evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Elimination and rearrangement of parental rDNA in the allotetraploid Nicotiana tabacum

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

AFLP analysis of genetic polymorphism and evolutionary relationships among cultivated and wild Nicotiana species

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Polymorphism of insertion sites of Ty1-copia class retrotransposons and its use for linkage and diversity analysis in pea

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic and epigenetic interactions in allopolyploid plants

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Silencing of transposable elements in plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Plant retrotransposons

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Retrotransposon activation followed by rapid repression in introgressed rice plants

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The mobility of the tobacco Tnt1 retrotransposon correlates with its transcriptional activation by fungal factors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Colinearity and its exceptions in orthologous adh regions of maize and sorghum

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparative analyses of genetic diversities within tomato and pepper collections detected by retrotransposon-based SSAP, AFLP and SSR

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome evolution in polyploids

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mechanisms of genomic rearrangements and gene expression changes in plant polyploids

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Extensive de Novo genomic variation in rice induced by introgression from wild rice (Zizania latifolia Griseb.).

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic distribution of Bare-1-like retrotransposable elements in the barley genome revealed by sequence-specific amplification polymorphisms (S-SAP)

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/17375323

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00438-007-0226-0

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17375323

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17375323%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 December 2019

PubMed publication ID

17375323

1 reference

stated in

Europe PubMed Central

PubMed publication ID

17375323

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:17375323%20AND%20SRC:MED&resulttype=core&format=json

retrieved

27 December 2019

 

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