Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae (Q24809467)

From Wikidata

Jump to navigation Jump to search

scientific article

edit

Language	Label	Description	Also known as
English	Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae	scientific article

Statements

instance of

scholarly article

0 references

title

Genomic neighborhoods for Arabidopsis retrotransposons: a role for targeted integration in the distribution of the Metaviridae (English)

0 references

main subject

retrotransposon

0 references

Metaviridae

object named as

Metaviridae

1 reference

based on heuristic

inferred from title

author name string

Brooke D Peterson-Burch

series ordinal

1

0 references

Dan Nettleton

series ordinal

2

0 references

Daniel F Voytas

series ordinal

3

0 references

language of work or name

English

0 references

publication date

2004

0 references

published in

Genome Biology

0 references

volume

5

0 references

issue

10

0 references

page(s)

R78

0 references

cites work

Insertion bias and purifying selection of retrotransposons in the Arabidopsis thaliana genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Evolutionary history of Oryza sativa LTR retrotransposons: a preliminary survey of the rice genome sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

MEGA2: molecular evolutionary genetics analysis software

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

The genome sequence of Drosophila melanogaster

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Transposable elements and genome organization: a comprehensive survey of retrotransposons revealed by the complete Saccharomyces cerevisiae genome sequence

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

BLAST 2 Sequences, a new tool for comparing protein and nucleotide sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Multiple sequence alignment with Clustal X

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Transcription start regions in the human genome are favored targets for MLV integration

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Automated de novo identification of repeat sequence families in sequenced genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

REPuter: the manifold applications of repeat analysis on a genomic scale

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Comparative evolutionary analysis of chalcone synthase and alcohol dehydrogenase loci in Arabidopsis, Arabis, and related genera (Brassicaceae)

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Repbase update: a database and an electronic journal of repetitive elements

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Origin and evolution of retroelements based upon their reverse transcriptase sequences

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

7 April 2017

Targeting survival: integration site selection by retroviruses and LTR-retrotransposons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Retrotransposons and their recognition of pol II promoters: a comprehensive survey of the transposable elements from the complete genome sequence of Schizosaccharomyces pombe

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Effects of recombination rate and gene density on transposable element distributions in Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Integration by design

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Genome size reduction through illegitimate recombination counteracts genome expansion in Arabidopsis

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Athila4 of Arabidopsis and Calypso of soybean define a lineage of endogenous plant retroviruses

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Transposons but not retrotransposons are located preferentially in regions of high recombination rate in Caenorhabditis elegans

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Retrotransposon evolution in diverse plant genomes

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Molecular paleontology of transposable elements from Arabidopsis thaliana

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Plant retrotransposons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Revising the selfish DNA hypothesis: new evidence on accumulation of transposable elements in heterochromatin

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Silent chromatin determines target preference of the Saccharomyces retrotransposon Ty5.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Nested retrotransposons in the intergenic regions of the maize genome

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 September 2017

Genes of the Pseudoviridae (Ty1/copia retrotransposons).

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

30 May 2018

The paleontology of intergene retrotransposons of maize

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

30 May 2018

Ty3 integrates within the region of RNA polymerase III transcription initiation

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

30 May 2018

Gene expression, synteny, and local similarity in human noncoding mutation rates.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Retrotransposon-gene associations are widespread among D. melanogaster populations.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Hairpin RNAs and retrotransposon LTRs effect RNAi and chromatin-based gene silencing

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Efficient transposition of the Tnt1 tobacco retrotransposon in the model legume Medicago truncatula.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

LTR_STRUC: a novel search and identification program for LTR retrotransposons

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Centromeric retroelements and satellites interact with maize kinetochore protein CENH3.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Genome dynamics and evolution of the Mla (powdery mildew) resistance locus in barley

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Substitution rates in the X- and Y-linked genes of the plants, Silene latifolia and S. dioica

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

What is finished, and why does it matter

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Structural and evolutionary analysis of the copia-like elements in the Arabidopsis thaliana genome.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Genetic definition and sequence analysis of Arabidopsis centromeres

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

Retrotransposon-related DNA sequences in the centromeres of grass chromosomes.

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

The Saccharomyces retrotransposon Ty5 integrates preferentially into regions of silent chromatin at the telomeres and mating loci

1 reference

stated in

PubMed Central

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=545598

retrieved

28 November 2018

The complete sequence of a heterochromatic island from a higher eukaryote. The Cold Spring Harbor Laboratory, Washington University Genome Sequencing Center, and PE Biosystems Arabidopsis Sequencing Consortium

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficient insertion mutagenesis of Arabidopsis by tissue culture-induced activation of the tobacco retrotransposon Tto1

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The evolutionary dynamics of repetitive DNA in eukaryotes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integration of the yeast retrotransposon Ty1 is targeted to regions upstream of genes transcribed by RNA polymerase III

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Yeast retrotransposons: finding a nice quiet neighborhood

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The statistical study of infectious diseases

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for the contribution of LTR retrotransposons to C. elegans gene evolution

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

On the role of unequal exchange in the containment of transposable element copy number

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Integrated cytogenetic map of chromosome arm 4S of A. thaliana: structural organization of heterochromatic knob and centromere region

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/15461796

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1186/GB-2004-5-10-R78

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1867811

OpenCitations bibliographic resource ID

1867811

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1867811

PMC publication ID

545598

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1867811

PubMed publication ID

15461796

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1867811

ResearchGate publication ID

8253342

0 references

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24809467&oldid=2176994147"