Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage (Q43946112)

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English	Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

title

Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage (English)

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

main subject

magnesium

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visualization

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based on heuristic

inferred from title

author

Jan Barciszewski

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5

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J Barciszewski

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

Volker Erdmann

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4

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V A Erdmann

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PubMed publication ID

11931387

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28 November 2017

author name string

M Z Barciszewska

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1

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

G Rapp

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2

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

C Betzel

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3

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

publication date

1 January 2001

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

published in

Molecular Biology Reports

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

volume

28

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

issue

2

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Europe PubMed Central

PubMed publication ID

11931387

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28 November 2017

page(s)

103-110

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PubMed publication ID

11931387

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cites work

5S ribosomal RNA.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The structural basis of ribosome activity in peptide bond synthesis

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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The loop E–loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folding of yeast 5S ribosomal RNA induced by magnesium binding

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

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Transfer RNAPhe isoacceptors possess non‐identical set of identity elements at high and low Mg2+ concentration

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Iron(II)-ethylenediaminetetraacetic acid catalyzed cleavage of RNA and DNA oligonucleotides: similar reactivity toward single- and double-stranded forms

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

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Metals, Motifs, and Recognition in the Crystal Structure of a 5S rRNA Domain

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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Crystal structure of a hepatitis delta virus ribozyme

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

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Biostructural chemistry of magnesium ion: characterization of the weak binding sites on tRNA(Phe)(yeast). Implications for conformational change and activity

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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Structure and functions of 5S rRNA.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Unfolding of the tertiary structure of specific tRNA and ribosomal 5S RNA from plants as studied with hydroxyl radicals

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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Mg2+ binding and structural stability of mature and in vitro synthesized unmodified Escherichia coli tRNAPhe

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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The Structural Basis of Hammerhead Ribozyme Self-Cleavage

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mapping tRNA and 5S RNA tertiary structures by charge dependent Fe(II)-catalyzed cleavage.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Higher order structure of the ribosomal 5 S RNA

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Crystal structure of the ribosome at 5.5 A resolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

tRNA mimics

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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The dynamic conformation of plant cytoplasmic 5S rRNAs.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

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Mapping protein-ligand interactions by footprinting, a radical idea

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Biochemical and NMR spectroscopy evidence for a new tertiary A-U base pair in lupin ribosomal 5 S RNA structure.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

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Comparative calorimetric studies on the dynamic conformation of plant 5S rRNA. I. Thermal unfolding pattern of lupin seeds and wheat germ 5S rRNAs, also in the presence of magnesium and sperminium cations

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Initial Stages of the Thermal Unfolding of Yeast Phenylalanine Transfer RNA as Studied by Chemical Modification: The Effect of Magnesium

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visualizing the higher order folding of a catalytic RNA molecule

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function of the hammerhead ribozyme: an unfinished story

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mg2+ dependence of the structure and thermodynamics of wheat germ and lupin seeds 5S rRNA.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Defining the inside and outside of a catalytic RNA molecule

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/11931387

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1023/A:1017951120531

1 reference

stated in

Europe PubMed Central

PubMed publication ID

11931387

retrieved

28 November 2017

Dimensions Publication ID

1038828915

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PubMed publication ID

11931387

1 reference

stated in

Europe PubMed Central

PubMed publication ID

11931387

retrieved

28 November 2017

 

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