Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage (Q43946112)

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English	Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

28 November 2017

Structural changes of tRNA and 5S rRNA induced with magnesium and visualized with synchrotron mediated hydroxyl radical cleavage (English)

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Europe PubMed Central

PubMed publication ID

28 November 2017

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Jan Barciszewski

5

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J Barciszewski

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Europe PubMed Central

PubMed publication ID

28 November 2017

4

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V A Erdmann

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28 November 2017

author name string

M Z Barciszewska

1

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28 November 2017

G Rapp

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28 November 2017

C Betzel

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28 November 2017

publication date

1 January 2001

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28 November 2017

Molecular Biology Reports

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28 November 2017

28

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28 November 2017

2

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28 November 2017

103-110

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Europe PubMed Central

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28 November 2017

5S ribosomal RNA.

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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The structural basis of ribosome activity in peptide bond synthesis

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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The loop E–loop D region of Escherichia coli 5S rRNA: the solution structure reveals an unusual loop that may be important for binding ribosomal proteins

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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The complete atomic structure of the large ribosomal subunit at 2.4 A resolution

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Folding of yeast 5S ribosomal RNA induced by magnesium binding

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Transfer RNAPhe isoacceptors possess non‐identical set of identity elements at high and low Mg2+ concentration

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Iron(II)-ethylenediaminetetraacetic acid catalyzed cleavage of RNA and DNA oligonucleotides: similar reactivity toward single- and double-stranded forms

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Metals, Motifs, and Recognition in the Crystal Structure of a 5S rRNA Domain

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Crystal structure of a hepatitis delta virus ribozyme

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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DNA strand breaking by the hydroxyl radical is governed by the accessible surface areas of the hydrogen atoms of the DNA backbone

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Biostructural chemistry of magnesium ion: characterization of the weak binding sites on tRNA(Phe)(yeast). Implications for conformational change and activity

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Structure and functions of 5S rRNA.

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Unfolding of the tertiary structure of specific tRNA and ribosomal 5S RNA from plants as studied with hydroxyl radicals

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Metal ion probing of rRNAs: evidence for evolutionarily conserved divalent cation binding pockets.

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Mg2+ binding and structural stability of mature and in vitro synthesized unmodified Escherichia coli tRNAPhe

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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The Structural Basis of Hammerhead Ribozyme Self-Cleavage

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Mapping tRNA and 5S RNA tertiary structures by charge dependent Fe(II)-catalyzed cleavage.

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Quantitative nucleic acids footprinting: thermodynamic and kinetic approaches

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Higher order structure of the ribosomal 5 S RNA

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Crystal structure of the ribosome at 5.5 A resolution

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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The dynamic conformation of plant cytoplasmic 5S rRNAs.

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Mapping protein-ligand interactions by footprinting, a radical idea

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Exploration of metal ion binding sites in RNA folds by Brownian-dynamics simulations

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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The crystal structure of yeast phenylalanine tRNA at 2.0 A resolution: cleavage by Mg(2+) in 15-year old crystals

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The crystal structure of yeast phenylalanine tRNA at 1.93 A resolution: a classic structure revisited

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Structural analysis of spermine and magnesium ion binding to yeast phenylalanine transfer RNA

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

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Biochemical and NMR spectroscopy evidence for a new tertiary A-U base pair in lupin ribosomal 5 S RNA structure.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Comparative calorimetric studies on the dynamic conformation of plant 5S rRNA. I. Thermal unfolding pattern of lupin seeds and wheat germ 5S rRNAs, also in the presence of magnesium and sperminium cations

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Initial Stages of the Thermal Unfolding of Yeast Phenylalanine Transfer RNA as Studied by Chemical Modification: The Effect of Magnesium

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Visualizing the higher order folding of a catalytic RNA molecule

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https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Time-resolved synchrotron X-ray "footprinting", a new approach to the study of nucleic acid structure and function: application to protein-DNA interactions and RNA folding.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Structure and function of the hammerhead ribozyme: an unfinished story

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mg2+ dependence of the structure and thermodynamics of wheat germ and lupin seeds 5S rRNA.

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

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Defining the inside and outside of a catalytic RNA molecule

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Examining the conformational dynamics of macromolecules with time-resolved synchrotron X-ray ‘footprinting’

1 reference

https://pubmed.ncbi.nlm.nih.gov/11931387

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1023/A:1017951120531

1 reference

Europe PubMed Central

PubMed publication ID

28 November 2017

Dimensions Publication ID

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PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

28 November 2017

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