The GeneOptimizer Algorithm: using a sliding window approach to cope with the vast sequence space in multiparameter DNA sequence optimization (Q42409830)

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scientific article published on September 1, 2010

Language	Label	Description	Also known as
English	The GeneOptimizer Algorithm: using a sliding window approach to cope with the vast sequence space in multiparameter DNA sequence optimization	scientific article published on September 1, 2010

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

The GeneOptimizer Algorithm: using a sliding window approach to cope with the vast sequence space in multiparameter DNA sequence optimization (English)

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Synthetic genes

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21189842

21 November 2024

author name string

David Raab

1

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Marcus Graf

2

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Frank Notka

3

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Thomas Schödl

4

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Ralf Wagner

5

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

language of work or name

1 reference

National Center for Biotechnology Information

PubMed publication ID

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21189842

21 November 2024

publication date

1 September 2010

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

full work available at URL

https://link.springer.com/content/pdf/10.1007%2Fs11693-010-9062-3.pdf

Portable Document Format

online access status

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21189842

21 November 2024

https://europepmc.org/articles/PMC2955205

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21189842

21 November 2024

https://europepmc.org/articles/PMC2955205?pdf=render

Portable Document Format

online access status

content deliverer

Europe PubMed Central

1 reference

Europe PubMed Central

PubMed publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21189842

21 November 2024

http://www.springerlink.com/index/pdf/10.1007/s11693-010-9062-3

1 reference

10.1007/S11693-010-9062-3

https://api.crossref.org/works/10.1007/S11693-010-9062-3

21 November 2024

Systems and Synthetic Biology

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

4

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

3

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

215-225

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

Design parameters to control synthetic gene expression in Escherichia coli

1 reference

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28 May 2018

Coding-sequence determinants of gene expression in Escherichia coli

1 reference

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28 May 2018

Gene synthesis demystified

1 reference

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Natural computation meta-heuristics for the in silico optimization of microbial strains

1 reference

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Heterologous protein expression is enhanced by harmonizing the codon usage frequencies of the target gene with those of the expression host.

1 reference

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Gene Designer: a synthetic biology tool for constructing artificial DNA segments

1 reference

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Hierarchy of sequence-dependent features associated with prokaryotic translation

1 reference

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Coupling of RNAi-mediated target downregulation with gene replacement

1 reference

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28 May 2018

DNAWorks: an automated method for designing oligonucleotides for PCR-based gene synthesis

1 reference

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Novel design architecture for genetic stability of recombinant poliovirus: the manipulation of G/C contents and their distribution patterns increases the genetic stability of inserts in a poliovirus-based RPS-Vax vector system

1 reference

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28 May 2018

Instability of repetitive DNA sequences: the role of replication in multiple mechanisms

1 reference

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Reduction of wobble-position GC bases in Corynebacteria genes and enhancement of PCR and heterologous expression.

1 reference

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28 May 2018

Optimizing heterologous expression in dictyostelium: importance of 5' codon adaptation

1 reference

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28 May 2018

Codon usage tabulated from international DNA sequence databases: status for the year 2000

1 reference

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28 May 2018

Splice site prediction in Arabidopsis thaliana pre-mRNA by combining local and global sequence information

1 reference

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28 May 2018

MatInd and MatInspector: new fast and versatile tools for detection of consensus matches in nucleotide sequence data

1 reference

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28 May 2018

Effects of rare codon clusters on high-level expression of heterologous proteins in Escherichia coli

1 reference

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28 May 2018

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

1 reference

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28 May 2018

A new technique for the assay of infectivity of human adenovirus 5 DNA

1 reference

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28 May 2018

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

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28 May 2018

Nonrandom utilization of codon pairs in Escherichia coli

1 reference

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28 May 2018

Consecutive low-usage leucine codons block translation only when near the 5' end of a message in Escherichia coli.

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Effects of codon usage versus putative 5'-mRNA structure on the expression of Fusarium solani cutinase in the Escherichia coli cytoplasm

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16 August 2018

Intraplasmid recombination in Streptomyces lividans 66

1 reference

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12 December 2020

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Identifiers

10.1007/S11693-010-9062-3

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

30 October 2017

ResearchGate publication ID

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