Nonrandom utilization of codon pairs in Escherichia coli (Q33857615)

29 July 2017

title

Nonrandom utilization of codon pairs in Escherichia coli (English)

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29 July 2017

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G W Hatfield

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29 July 2017

G A Gutman

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29 July 2017

language of work or name

English

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publication date

1 May 1989

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Proceedings of the National Academy of Sciences of the United States of America

29 July 2017

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inferred from page(s)

published in

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

3699-3703

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Codon catalog usage is a genome strategy modulated for gene expressivity

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Recognition of protein coding regions in DNA sequences

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

TRNA2Gln Su+2 mutants that increase amber suppression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Contextual constraints on synonymous codon choice

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Codon usage in bacteria: correlation with gene expressivity

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Preferential codon usage in prokaryotic genes: the optimal codon-anticodon interaction energy and the selective codon usage in efficiently expressed genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

The codon preference plot: graphic analysis of protein coding sequences and prediction of gene expression.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Escherichia coli ribosomes translate in vivo with variable rate

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

An effect of codon context on the mistranslation of UGU codons in vitro.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Measurements of the effects that coding for a protein has on a DNA sequence and their use for finding genes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Eukaryotic dinucleotide preference rules and their implications for degenerate codon usage

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Nucleotide sequence of the coding portion of human alpha globin messenger RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Codon usage can affect efficiency of translation of genes inEscherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Sense codons are found in specific contexts.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Effect of distribution of unfavourable codons on the maximum rate of gene expression by an heterologous organism.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Constraints on codon context in Escherichia coli genes. Their possible role in modulating the efficiency of translation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Codon preference reflects mistranslational constraints: a proposal

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Cotranslational insertion of selenocysteine into formate dehydrogenase from Escherichia coli directed by a UGA codon

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Codon usage and gene expression

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Translation rate modification by preferential codon usage: intragenic position effects.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Isopentenyladenosine deficient tRNA from an antisuppressor mutant of Saccharomyces cerevisiae

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Inhibition of Qβ RNA 70S ribosome initiation complex formation by an oligonucleotide complementary to the 3′ terminal region of E. coli 16S ribosomal RNA

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Differential utilization of leucyl-tRNAs by Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Initiator-tRNA recognizes a tetranucleotide codon during the 30 S initiation complex formation

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

DNA sequences from the str operon of Escherichia coli

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Procollagen Genes: Further Sequence Studies and Interspecies Comparisons

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

Context effects: Translation of UAG codon by suppressor tRNA is affected by the sequence following UAG in the message

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=287207

The influence of codon context on genetic code translation

29 October 2018

1 reference

12 December 2020

Prevalence of amber suppressor-containing coliforms in the natural environment

1 reference

12 December 2020

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes

1 reference

12 December 2020

Usage of the three termination codons: compilation and analysis of the known eukaryotic and prokaryotic translation termination sequences

1 reference

12 December 2020

Effects of surrounding sequence on the suppression of nonsense codons

1 reference

12 December 2020

Codon context effects in missense suppression

1 reference

12 December 2020

Codon specificity of starvation induced misreading

1 reference

12 December 2020

Effects of miaA on translation and growth rates

1 reference

12 December 2020

A functional requirement for modification of the wobble nucleotide in tha anticodon of a T4 suppressor tRNA

1 reference

12 December 2020

Nucleotides contiguous to AUG affect translational initiation

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.86.10.3699

1 reference

release_3woiqwqvg5brdo6arllghomsfi

29 July 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3woiqwqvg5brdo6arllghomsfi

24 November 2022

mapped directly with Wikidata item

PMC publication ID

287207

1 reference

29 July 2017

1 reference