MBD4-mediated glycosylase activity on a chromatin template is enhanced by acetylation. (Q41337226)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

title

MBD4-mediated glycosylase activity on a chromatin template is enhanced by acetylation (English)

1 reference

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8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

Kevin So

1 reference

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8 January 2020

Claire G Cupples

series ordinal

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8 January 2020

Juan Ausió

series ordinal

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8 January 2020

language of work or name

English

0 references

publication date

2 June 2008

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json

Molecular and Cellular Biology

8 January 2020

published in

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8 January 2020

volume

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8 January 2020

issue

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8 January 2020

page(s)

4734-4744

1 reference

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Structure and mechanism for DNA lesion recognition

8 January 2020

cites work

1 reference

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ATP-dependent chromatin remodeling is required for base excision repair in conventional but not in variant H2A.Bbd nucleosomes.

1 October 2017

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Different structural states in oligonucleosomes are required for early versus late steps of base excision repair.

1 October 2017

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Intrinsic disorder and autonomous domain function in the multifunctional nuclear protein, MeCP2.

1 October 2017

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DNA methylation immediately adjacent to active histone marking does not silence transcription.

1 October 2017

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Long-range histone acetylation: biological significance, structural implications, and mechanisms

1 October 2017

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Five repair pathways in one context: chromatin modification during DNA repair

1 October 2017

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The DNA N-glycosylase MED1 exhibits preference for halogenated pyrimidines and is involved in the cytotoxicity of 5-iododeoxyuridine.

1 October 2017

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1 October 2017

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1 October 2017

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1 October 2017

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1 October 2017

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Accommodation and repair of a UV photoproduct in DNA at different rotational settings on the nucleosome surface

1 October 2017

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5-halogenated pyrimidine lesions within a CpG sequence context mimic 5-methylcytosine by enhancing the binding of the methyl-CpG-binding domain of methyl-CpG-binding protein 2 (MeCP2).

1 October 2017

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Nucleotide excision repair in chromatin: the shape of things to come

1 October 2017

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The thymine DNA glycosylase MBD4 represses transcription and is associated with methylated p16(INK4a) and hMLH1 genes

1 October 2017

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Characterization of nucleosomes consisting of the human testis/sperm-specific histone H2B variant (hTSH2B).

1 October 2017

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Syndromes of disordered chromatin remodeling

1 October 2017

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SWISS-MODEL: An automated protein homology-modeling server

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Suppressed catalytic activity of base excision repair enzymes on rotationally positioned uracil in nucleosomes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Chromatin compaction by human MeCP2. Assembly of novel secondary chromatin structures in the absence of DNA methylation

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Comparative study of methyl-CpG-binding domain proteins

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Mismatch Repair in Methylated DNA: STRUCTURE AND ACTIVITY OF THE MISMATCH-SPECIFIC THYMINE GLYCOSYLASE DOMAIN OF METHYL-CpG-BINDING PROTEIN MBD4

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

DNA base excision repair of uracil residues in reconstituted nucleosome core particles

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Association of CBP/p300 acetylase and thymine DNA glycosylase links DNA repair and transcription

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Solution structure of the methyl-CpG binding domain of human MBD1 in complex with methylated DNA

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Methyl-CpG-binding proteins. Targeting specific gene repression.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Investigation of the substrate spectrum of the human mismatch-specific DNA N-glycosylase MED1 (MBD4): fundamental role of the catalytic domain

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Biphasic kinetics of the human DNA repair protein MED1 (MBD4), a mismatch-specific DNA N-glycosylase

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

NPS@: network protein sequence analysis

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Rett syndrome is caused by mutations in X-linked MECP2, encoding methyl-CpG-binding protein 2

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

The thymine glycosylase MBD4 can bind to the product of deamination at methylated CpG sites

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

MED1, a novel human methyl-CpG-binding endonuclease, interacts with DNA mismatch repair protein MLH1

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Disruption of higher-order folding by core histone acetylation dramatically enhances transcription of nucleosomal arrays by RNA polymerase III

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Correlation between transcription and C to T mutations in the non-transcribed DNA strand.

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Linker histone protects linker DNA on only one side of the core particle and in a sequence-dependent manner

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Nucleosome translational position, not histone acetylation, determines TFIIIA binding to nucleosomal Xenopus laevis 5S rRNA genes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Crystal structure of the nucleosome core particle at 2.8 A resolution

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Cloning and expression of human G/T mismatch-specific thymine-DNA glycosylase

1 October 2017

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

1 October 2017

12 December 2020

Preferential and asymmetric interaction of linker histones with 5S DNA in the nucleosome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Cleavage of Structural Proteins during the Assembly of the Head of Bacteriophage T4

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Chromatin reconstituted from tandemly repeated cloned DNA fragments and core histones: a model system for study of higher order structure

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Use of selectively trypsinized nucleosome core particles to analyze the role of the histone "tails" in the stabilization of the nucleosome

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

DNA and protein determinants of nucleosome positioning on sea urchin 5S rRNA gene sequences in vitro

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

A sensitive genetic assay for the detection of cytosine deamination: determination of rate constants and the activation energy

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

DNA methylation: evolution of a bacterial immune function into a regulator of gene expression and genome structure in higher eukaryotes

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Targeted mutation of the DNA methyltransferase gene results in embryonic lethality

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Most microsatellite unstable sporadic colorectal carcinomas carry MBD4 mutations

1 October 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Modulation of DNA damage and DNA repair in chromatin.

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Preferential DNA Repair in Human Cells

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Identification of a mammalian protein that binds specifically to DNA containing methylated CpGs

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Histone acetylation reduces nucleosome core particle linking number change

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Influence of chromatin folding on transcription initiation and elongation by RNA polymerase III

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Reconstitution of chromatin core particles

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Nucleosome structure controls rates of excision repair in DNA of human cells

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Probasin promoter assembles into a strongly positioned nucleosome that permits androgen receptor binding

11 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Multiple modes of interaction between the methylated DNA binding protein MeCP2 and chromatin.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Base excision repair in nucleosomes lacking histone tails.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Mechanism of 2-aminopurine-stimulated mutagenesis in Escherichia coli

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Nucleotide excision repair from site-specifically platinum-modified nucleosomes.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Nucleosome structural changes due to acetylation.

19 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2493366

Acetylation increases the alpha-helical content of the histone tails of the nucleosome

19 August 2018

1 reference

12 December 2020

Characterization of the stability and folding of H2A.Z chromatin particles: implications for transcriptional activation

1 reference

12 December 2020

The vsr gene product of E. coli K-12 is a strand- and sequence-specific DNA mismatch endonuclease

1 reference

12 December 2020

Two cell lines from lymphomas of Marek's disease

1 reference

12 December 2020

Dynamics and equilibria of nucleosomes at elevated ionic strength

1 reference

12 December 2020

Histone hyperacetylation: its effects on nucleosome conformation and stability

1 reference

12 December 2020

Reconstitution of chromatin complexes from high-performance liquid chromatography-purified histones

1 reference

12 December 2020

Effect of interaction between 5-azacytidine and DNA (cytosine-5) methyltransferase on C-to-G and C-to-T mutations in Escherichia coli

1 reference

12 December 2020

H2A.Z stabilizes chromatin in a way that is dependent on core histone acetylation

1 reference

12 December 2020

Modulation of chromatin folding by histone acetylation

1 reference

12 December 2020

Folding of chromatin in the presence of heterogeneous histone H1 binding to nucleosomes

1 reference

12 December 2020

Identifiers

DOI

10.1128/MCB.00588-08

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json

8 January 2020

PubMed publication ID

18519584

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18519584%20AND%20SRC:MED&resulttype=core&format=json