Relationships among stop codon usage bias, its context, isochores, and gene expression level in various eukaryotes (Q49945432)

From Wikidata

Jump to navigation Jump to search

scientific article published on 13 September 2005

edit

Language	Label	Description	Also known as
English	Relationships among stop codon usage bias, its context, isochores, and gene expression level in various eukaryotes	scientific article published on 13 September 2005

Statements

instance of

scholarly article

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

title

Relationships among stop codon usage bias, its context, isochores, and gene expression level in various eukaryotes (English)

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

main subject

bias

1 reference

based on heuristic

inferred from title

author name string

Jingchun Sun

series ordinal

1

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

Ming Chen

series ordinal

2

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

Jinlin Xu

series ordinal

3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

Jianhua Luo

series ordinal

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

publication date

13 September 2005

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

published in

Journal of Molecular Evolution

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

volume

61

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

issue

4

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

page(s)

437-444

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

cites work

Evolution of synonymous codon usage in metazoans

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isochores and tissue-specificity

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sequence analysis suggests that tetra-nucleotides signal the termination of protein synthesis in eukaryotes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The influence of 5' codon context on translation termination in Saccharomyces cerevisiae

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usages in different gene classes of the Escherichia coli genome

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The EMBL Nucleotide Sequence Database: major new developments

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The efficiency of translation termination is determined by a synergistic interplay between upstream and downstream sequences in Saccharomyces cerevisiae.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection conflicts, gene expression, and codon usage trends in yeast

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Information content of binding sites on nucleotide sequences

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UTRdb and UTRsite: specialized databases of sequences and functional elements of 5' and 3' untranslated regions of eukaryotic mRNAs. Update 2002.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Only the last amino acids in the nascent peptide influence translation termination in Escherichia coli genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Translational termination efficiency in mammals is influenced by the base following the stop codon.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selection on codon usage in Drosophila americana

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Large-scale analysis of the human and mouse transcriptomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Impact of the six nucleotides downstream of the stop codon on translation termination

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mammalian mutation pressure, synonymous codon choice, and mRNA degradation

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genetic drift in an infinite population. The pseudohitchhiking model

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Selective differences among translation termination codons

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Termination of translation: interplay of mRNA, rRNAs and release factors?

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

WebLogo: A Sequence Logo Generator

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene expression level influences amino acid usage, but not codon usage, in the tsetse fly endosymbiont Wigglesworthia.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Vienna RNA secondary structure server

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The translational stop signal: codon with a context, or extended factor recognition element?

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Base composition and expression level of human genes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Characterizations of highly expressed genes of four fast-growing bacteria

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Correlations between mRNA expression levels and GC contents of coding and untranslated regions of genes in rodents.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Relationship of codon bias to mRNA concentration and protein length in Saccharomyces cerevisiae

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

DNA G+C content of the third codon position and codon usage biases of human genes.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

UAG readthrough in mammalian cells: effect of upstream and downstream stop codon contexts reveal different signals

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The effects of mutation and natural selection on codon bias in the genes of Drosophila

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/16170455

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/S00239-004-0277-3

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

Dimensions Publication ID

1016911462

0 references

PubMed publication ID

16170455

1 reference

stated in

Europe PubMed Central

PubMed publication ID

16170455

retrieved

23 February 2018

reference URL

http://europepmc.org/abstract/MED/16170455

 

Sitelinks

Wikipedia(0 entries)

edit

Wikibooks(0 entries)

edit

Wikinews(0 entries)

edit

Wikiquote(0 entries)

edit

Wikisource(0 entries)

edit

Wikiversity(0 entries)

edit

Wikivoyage(0 entries)

edit

Wiktionary(0 entries)

edit

Multilingual sites(0 entries)

edit

Retrieved from "https://www.wikidata.org/w/index.php?title=Q49945432&oldid=2233462991"