A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes (Q24797873)

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English	A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes	scientific article

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scholarly article

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title

A simple model based on mutation and selection explains trends in codon and amino-acid usage and GC composition within and across genomes (English)

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author

Laura Landweber

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3

object named as

L F Landweber

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author name string

R D Knight

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1

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S J Freeland

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2

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language of work or name

English

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publication date

2001

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published in

Genome Biology

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volume

2

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issue

4

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page(s)

RESEARCH0010

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cites work

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Studies of codon usage and tRNA genes of 18 unicellular organisms and quantification of Bacillus subtilis tRNAs: gene expression level and species-specific diversity of codon usage based on multivariate analysis

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The relationship between synonymous codon usage and protein structure

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28 September 2017

The genetic code is one in a million

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28 September 2017

How optimized is the translational machinery in Escherichia coli, Salmonella typhimurium and Saccharomyces cerevisiae?

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28 September 2017

What drives codon choices in human genes?

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28 September 2017

Synonymous codon bias is related to gene length in Escherichia coli: selection for translational accuracy?

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28 September 2017

Reduced synonymous substitution rate at the start of enterobacterial genes

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Hydrophobicity, expressivity and aromaticity are the major trends of amino-acid usage in 999 Escherichia coli chromosome-encoded genes

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28 September 2017

Codon usage in Caenorhabditis elegans: delineation of translational selection and mutational biases

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28 September 2017

Synonymous codon usage in Drosophila melanogaster: natural selection and translational accuracy.

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28 September 2017

Codon usage and genome evolution.

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28 September 2017

A model of evolutionary base substitutions and its application with special reference to rapid change of pseudogenes

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28 September 2017

Codon usage in bacteria: correlation with gene expressivity

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28 September 2017

Correlation between the abundance of Escherichia coli transfer RNAs and the occurrence of the respective codons in its protein genes: A proposal for a synonymous codon choice that is optimal for the E. coli translational system

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28 September 2017

The molecular basis for the genetic code

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28 September 2017

Seapration of B. subtilis DNA into complementary strands. II. Template functions and composition as determined by transcription with RNA polymerase

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28 September 2017

Codon usage in yeast: cluster analysis clearly differentiates highly and lowly expressed genes

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28 September 2017

The guanine and cytosine content of genomic DNA and bacterial evolution

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28 September 2017

Directional mutation pressure and neutral molecular evolution

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28 September 2017

Codon usage patterns in Escherichia coli, Bacillus subtilis, Saccharomyces cerevisiae, Schizosaccharomyces pombe, Drosophila melanogaster and Homo sapiens; a review of the considerable within-species diversity

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28 September 2017

An evolutionary perspective on synonymous codon usage in unicellular organisms

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28 September 2017

Codon usage and gene expression

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28 September 2017

Codon usage and gene expression level in Dictyostelium discoideum: highly expressed genes do 'prefer' optimal codons

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28 September 2017

Directional mutation pressure and transfer RNA in choice of the third nucleotide of synonymous two-codon sets

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28 September 2017

Equal G and C contents in histone genes indicate selection pressures on mRNA secondary structure

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28 September 2017

Directional mutation pressure, selective constraints, and genetic equilibria

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28 September 2017

Secondary structure of MS2 phage RNA and bias in code word usage

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28 September 2017

Codon usage and secondary structure of the rabbit alpha-globin mRNA: a hypothesis

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28 September 2017

The nonrandom location of synonymous codons suggests that reading frame-independent forces have patterned codon preferences

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30 May 2018

Codon-anticodon assignment and detection of codon usage trends in seven microbial genomes

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30 May 2018

Nucleotide composition bias affects amino acid content in proteins coded by animal mitochondria

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30 May 2018

Coevolution of codon usage and transfer RNA abundance

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30 May 2018

Codon usage and secondary structure of mRNA.

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30 May 2018

Growth rate-optimised tRNA abundance and codon usage.

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30 May 2018

Absence of translationally selected synonymous codon usage bias in Helicobacter pylori.

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28 November 2018

Studies on the relationships between the synonymous codon usage and protein secondary structural units

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28 November 2018

Two aspects of DNA base composition: G+C content and translation-coupled deviation from intra-strand rule of A = T and G = C.

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28 November 2018

The role of the codon first letter in the relationship between genomic GC content and protein amino acid composition

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28 November 2018

Specific correlations between relative synonymous codon usage and protein secondary structure

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28 November 2018

Relationship between G + C in silent sites of codons and amino acid composition of human proteins

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28 November 2018

Properties of a general model of DNA evolution under no-strand-bias conditions.

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28 November 2018

Intrastrand parity rules of DNA base composition and usage biases of synonymous codons.

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28 November 2018

Codon usage and transfer RNA contents: organism-specific codon-choice patterns in reference to the isoacceptor contents

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28 November 2018

Genetic variability maintained in a finite population due to mutational production of neutral and nearly neutral isoalleles

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Correlation between the abundance of yeast transfer RNAs and the occurrence of the respective codons in protein genes. Differences in synonymous codon choice patterns of yeast and Escherichia coli with reference to the abundance of isoaccepting tran

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Influence of genomic G+C content on average amino-acid composition of proteins from 59 bacterial species

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12 December 2020

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Codon usage changes and sequence dissimilarity between human and rat

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12 December 2020

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Directional mutational pressure affects the amino acid composition and hydrophobicity of proteins in bacteria

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12 December 2020

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The correlation of protein hydropathy with the base composition of coding sequences

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12 December 2020

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Codon distribution in vertebrate genes may be used to predict gene length

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12 December 2020

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Compositional correlation between deoxyribonucleic acid and protein

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12 December 2020

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Correlations between the compositional properties of human genes, codon usage, and amino acid composition of proteins

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12 December 2020

based on heuristic

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Non-random usage of 'degenerate' codons is related to protein three-dimensional structure

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12 December 2020

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On the Fundamental Nature and Evolution of the Genetic Code

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Identifiers

DOI

10.1186/GB-2001-2-4-RESEARCH0010

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1298899

OpenCitations bibliographic resource ID

1298899

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1298899

PMC publication ID

31479

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1298899

PubMed publication ID

11305938

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

1298899

ResearchGate publication ID

12028404

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