Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes. (Q46227425)

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4 April 2020

title

Optimizing and evaluating the reconstruction of Metagenome-assembled microbial genomes (English)

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4 April 2020

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4 April 2020

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4 April 2020

1 reference

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4 April 2020

Fabiano Thompson

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4 April 2020

Elizabeth A Dinsdale

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Genivaldo Gueiros Z Silva

4 April 2020

object named as

Genivaldo G Z Silva

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4 April 2020

J Matthew Haggerty

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4 April 2020

Michael Doane

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4 April 2020

Kevin Walsh

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4 April 2020

Douglas T Beattie

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4 April 2020

Dnyanada Pande

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4 April 2020

Parisa Zaeri

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4 April 2020

language of work or name

English

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publication date

28 November 2017

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4 April 2020

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4 April 2020

volume

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4 April 2020

issue

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4 April 2020

page(s)

915

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Critical Assessment of Metagenome Interpretation-a benchmark of metagenomics software.

4 April 2020

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24 May 2018

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Fragmentation and Coverage Variation in Viral Metagenome Assemblies, and Their Effect in Diversity Calculations

24 May 2018

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Detection of low-abundance bacterial strains in metagenomic datasets by eigengenome partitioning

24 May 2018

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MetaBAT, an efficient tool for accurately reconstructing single genomes from complex microbial communities

24 May 2018

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Niche distribution and influence of environmental parameters in marine microbial communities: a systematic review

24 May 2018

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Reconstructing 16S rRNA genes in metagenomic data

24 May 2018

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CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

24 May 2018

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GroopM: an automated tool for the recovery of population genomes from related metagenomes.

24 May 2018

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Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

24 May 2018

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Local genomic adaptation of coral reef-associated microbiomes to gradients of natural variability and anthropogenic stressors.

24 May 2018

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FOCUS: an alignment-free model to identify organisms in metagenomes using non-negative least squares

24 May 2018

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PhyloSift: phylogenetic analysis of genomes and metagenomes

24 May 2018

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24 May 2018

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Genome sequences of rare, uncultured bacteria obtained by differential coverage binning of multiple metagenomes

24 May 2018

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Multivariate analysis of functional metagenomes.

24 May 2018

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QUAST: quality assessment tool for genome assemblies

24 May 2018

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Community structure and functional gene profile of bacteria on healthy and diseased thalli of the red seaweed Delisea pulchra

24 May 2018

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Reference-independent comparative metagenomics using cross-assembly: crAss.

24 May 2018

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Oxygen minimum zones harbour novel viral communities with low diversity

24 May 2018

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Scaling metagenome sequence assembly with probabilistic de Bruijn graphs

24 May 2018

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Functional assignment of metagenomic data: challenges and applications

24 May 2018

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24 May 2018

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High diversity of microplankton surrounds deep-water coral reef in the Norwegian Sea.

24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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24 May 2018

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The metagenomics RAST server - a public resource for the automatic phylogenetic and functional analysis of metagenomes

24 May 2018

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Functional metagenomic profiling of nine biomes

24 May 2018

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Microbial ecology of four coral atolls in the Northern Line Islands.

24 May 2018

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The RAST Server: rapid annotations using subsystems technology

24 May 2018

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DNA-DNA hybridization values and their relationship to whole-genome sequence similarities

24 May 2018

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TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

24 May 2018

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Evolutionary implications of microbial genome tetranucleotide frequency biases

24 May 2018

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Exploring prokaryotic diversity in the genomic era

24 May 2018

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Compositional biases of bacterial genomes and evolutionary implications

24 May 2018

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Minimum information about a single amplified genome (MISAG) and a metagenome-assembled genome (MIMAG) of bacteria and archaea.

24 May 2018

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Considerations for the development and application of control materials to improve metagenomic microbial community profiling

15 August 2018

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Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-4294-1

Critical Assessment of Metagenome Interpretation − a benchmark of computational metagenomics software

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS12864-017-4294-1

10.1186/S12864-017-4294-1

21 January 2018

Identifiers

DOI

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Dimensions Publication ID

4 April 2020

1 reference

9 September 2019

https://scigraph.springernature.com/pub.10.1186/s12864-017-4294-1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29183281%20AND%20SRC:MED&resulttype=core&format=json

4 April 2020

PubMed publication ID

29183281

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:29183281%20AND%20SRC:MED&resulttype=core&format=json