Folding rates and low-entropy-loss routes of two-state proteins. (Q46016331)

18 December 2017

title

Folding rates and low-entropy-loss routes of two-state proteins. (English)

1 reference

18 December 2017

0 references

Ken A Dill

1 reference

18 December 2017

author name string

Thomas R Weikl

series ordinal

1 reference

18 December 2017

language of work or name

English

0 references

publication date

1 June 2003

1 reference

18 December 2017

Journal of Molecular Biology

published in

1 reference

18 December 2017

volume

329

1 reference

18 December 2017

issue

1 reference

18 December 2017

page(s)

585-598

1 reference

18 December 2017

Contact order, transition state placement and the refolding rates of single domain proteins.

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Topology, stability, sequence, and length: defining the determinants of two-state protein folding kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

A simple model for calculating the kinetics of protein folding from three-dimensional structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Prediction of protein-folding mechanisms from free-energy landscapes derived from native structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

A theoretical search for folding/unfolding nuclei in three-dimensional protein structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

First principles prediction of protein folding rates

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Exploring structures in protein folding funnels with free energy functionals: the transition state ensemble

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Topological and energetic factors: what determines the structural details of the transition state ensemble and "en-route" intermediates for protein folding? An investigation for small globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Prediction of folding mechanism for circular-permuted proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

The roles of stability and contact order in determining protein folding rates.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

A possible folding pathway of bovine pancreatic RNase

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Constructing, verifying, and dissecting the folding transition state of chymotrypsin inhibitor 2 with all-atom simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Stiffness of the distal loop restricts the structural heterogeneity of the transition state ensemble in SH3 domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

How the folding rate constant of simple, single-domain proteins depends on the number of native contacts

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Simple model of protein folding kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Identification and characterization of the unfolding transition state of chymotrypsin inhibitor 2 by molecular dynamics simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Long timescale simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

"New View" of Protein Folding Reconciled with the Old Through Multiple Unfolding Simulations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Role of native topology investigated by multiple unfolding simulations of four SH3 domains

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

From folding theories to folding proteins: a review and assessment of simulation studies of protein folding and unfolding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Thermal unfolding molecular dynamics simulation of Escherichia coli dihydrofolate reductase: thermal stability of protein domains and unfolding pathway

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Cooperativity in protein-folding kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Transition states and the meaning of Phi-values in protein folding kinetics

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

How do small single-domain proteins fold?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Mechanisms of protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Specific intermediates in the folding reactions of small proteins and the mechanism of protein folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

The Structure of the Transition State for Folding of Chymotrypsin Inhibitor 2 Analysed by Protein Engineering Methods: Evidence for a Nucleation-condensation Mechanism for Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Experiment and theory highlight role of native state topology in SH3 folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

The folding transition state between SH3 domains is conformationally restricted and evolutionarily conserved.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Hydrophobic core packing in the SH3 domain folding transition state

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

The SH3-fold family: experimental evidence and prediction of variations in the folding pathways

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

From snapshot to movie: phi analysis of protein folding transition states taken one step further

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Characterisation of the transition states for protein folding: towards a new level of mechanistic detail in protein engineering analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Mutational analysis of acylphosphatase suggests the importance of topology and contact order in protein folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Critical role of beta-hairpin formation in protein G folding.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

A breakdown of symmetry in the folding transition state of protein L

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

The folding of an immunoglobulin-like Greek key protein is defined by a common-core nucleus and regions constrained by topology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Role of the chain termini for the folding transition state of the cold shock protein

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

Apparent two-state tendamistat folding is a sequential process along a defined route

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2803%2900436-4

10.1016/S0022-2836(03)00436-4

7 January 2021

Identifiers

DOI

1 reference

18 December 2017

1 reference

18 December 2017