Preview: a program for surveying shotgun proteomics tandem mass spectrometry data (Q33913970)

30 July 2017

title

Preview: a program for surveying shotgun proteomics tandem mass spectrometry data (English)

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30 July 2017

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30 July 2017

Yong J Kil

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30 July 2017

Christopher Becker

series ordinal

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30 July 2017

Wendy Sandoval

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30 July 2017

Marshall Bern

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30 July 2017

language of work or name

English

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publication date

13 June 2011

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30 July 2017

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

5259-5267

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Conversion of methionine into homocysteic acid in heavily oxidized proteomics samples

30 July 2017

cites work

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28 July 2018

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In-depth analysis of tandem mass spectrometry data from disparate instrument types

28 July 2018

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28 July 2018

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Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences

28 July 2018

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Protein identification by spectral networks analysis

28 July 2018

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Validated MALDI-TOF/TOF mass spectra for protein standards

28 July 2018

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

28 July 2018

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Lookup peaks: a hybrid of de novo sequencing and database search for protein identification by tandem mass spectrometry

28 July 2018

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Identification of post-translational modifications by blind search of mass spectra.

28 July 2018

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The Orbitrap: a new mass spectrometer

28 July 2018

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Evaluation of algorithms for protein identification from sequence databases using mass spectrometry data

28 July 2018

1 reference

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TANDEM: matching proteins with tandem mass spectra

28 July 2018

1 reference

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A statistical model for identifying proteins by tandem mass spectrometry

28 July 2018

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134881

Error tolerant searching of uninterpreted tandem mass spectrometry data

28 July 2018

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Role of accurate mass measurement (+/- 10 ppm) in protein identification strategies employing MS or MS/MS and database searching.

28 July 2018

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

28 July 2018

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Prediction of novel modifications by unrestrictive search of tandem mass spectra.

29 October 2018

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Large-scale proteomics analysis of the human kinome

29 October 2018

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A spectral clustering approach to MS/MS identification of post-translational modifications

29 October 2018

1 reference

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The Paragon Algorithm, a next generation search engine that uses sequence temperature values and feature probabilities to identify peptides from tandem mass spectra

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134881

Reporting protein identification data: the next generation of guidelines.

29 October 2018

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ModifiComb, a new proteomic tool for mapping substoichiometric post-translational modifications, finding novel types of modifications, and fingerprinting complex protein mixtures.

29 October 2018

1 reference

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InsPecT: identification of posttranslationally modified peptides from tandem mass spectra

29 October 2018

1 reference

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Discovering known and unanticipated protein modifications using MS/MS database searching

29 October 2018

1 reference

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Unimod: Protein modifications for mass spectrometry

29 October 2018

1 reference

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Popitam: towards new heuristic strategies to improve protein identification from tandem mass spectrometry data

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134881

Overalkylation of a protein digest with iodoacetamide.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134881

Probability-based protein identification by searching sequence databases using mass spectrometry data

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3134881

29 October 2018

Identifiers

DOI

10.1021/AC200609A

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30 July 2017

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30 July 2017

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