Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences (Q33607513)

28 July 2017

title

Tandem mass spectrometry for the detection of plant pathogenic fungi and the effects of database composition on protein inferences (English)

1 reference

28 July 2017

David L Tabb

1 reference

28 July 2017

Neerav D Padliya

1 reference

28 July 2017

Wesley M Garrett

series ordinal

1 reference

28 July 2017

Kimberly B Campbell

series ordinal

1 reference

28 July 2017

Bret Cooper

series ordinal

1 reference

28 July 2017

publication date

1 November 2007

1 reference

28 July 2017

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28 July 2017

1 reference

28 July 2017

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28 July 2017

page(s)

3932-3942

1 reference

Estimating probabilities of correct identification from results of mass spectral library searches

28 July 2017

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis

21 June 2018

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21 June 2018

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Dissecting defense-related and developmental transcriptional responses of maize during Ustilago maydis infection and subsequent tumor formation

21 June 2018

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21 June 2018

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21 June 2018

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Assessing data quality of peptide mass spectra obtained by quadrupole ion trap mass spectrometry

21 June 2018

1 reference

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21 June 2018

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21 June 2018

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Evaluation of multidimensional chromatography coupled with tandem mass spectrometry (LC/LC-MS/MS) for large-scale protein analysis: the yeast proteome

21 June 2018

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Expanding the organismal scope of proteomics: cross-species protein identification by mass spectrometry and its implications

21 June 2018

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ProbID: a probabilistic algorithm to identify peptides through sequence database searching using tandem mass spectral data

21 June 2018

1 reference

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Empirical statistical model to estimate the accuracy of peptide identifications made by MS/MS and database search

21 June 2018

1 reference

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Characterization of intact microorganisms by MALDI mass spectrometry

21 June 2018

1 reference

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An automated multidimensional protein identification technology for shotgun proteomics

21 June 2018

1 reference

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Large-scale analysis of the yeast proteome by multidimensional protein identification technology

21 June 2018

1 reference

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Gene genealogies reveal global phylogeographic structure and reproductive isolation among lineages of Fusarium graminearum, the fungus causing wheat scab

21 June 2018

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21 June 2018

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21 June 2018

1 reference

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Protein identification at the low femtomole level from silver-stained gels using a new fritless electrospray interface for liquid chromatography-microspray and nanospray mass spectrometry

21 June 2018

1 reference

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Future prospects for the analysis of complex biological systems using micro-column liquid chromatography-electrospray tandem mass spectrometry

21 June 2018

1 reference

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21 June 2018

1 reference

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Phosphoproteome profiling of human skin fibroblast cells in response to low- and high-dose irradiation.

21 June 2018

1 reference

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Peptide sequence tags for fast database search in mass-spectrometry.

30 October 2018

1 reference

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Probability-based evaluation of peptide and protein identifications from tandem mass spectrometry and SEQUEST analysis: the human proteome

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Evaluation of "shotgun" proteomics for identification of biological threat agents in complex environmental matrixes: experimental simulations.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Potential for false positive identifications from large databases through tandem mass spectrometry.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Automatic quality assessment of peptide tandem mass spectra.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Characterization of antimicrobial peptides against a US strain of the rice pathogen Rhizoctonia solani

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Impact of ion trap tandem mass spectra variability on the identification of peptides.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

GutenTag: high-throughput sequence tagging via an empirically derived fragmentation model

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Investigative proteomics: identification of an unknown plant virus from infected plants using mass spectrometry.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Expression of a Phytophthora sojae necrosis-inducing protein occurs during transition from biotrophy to necrotrophy

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Genetic dissection of a major Fusarium head blight QTL in tetraploid wheat

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2810652

Sequence analysis of polypeptides by collision activated dissociation on a triple quadrupole mass spectrometer

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17922518

12 December 2020

inferred from PubMed ID database lookup

Agriculture. Plant pathologists gear up for battle with dread fungus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17922518

12 December 2020

inferred from PubMed ID database lookup

Shotgun identification of proteins from uredospores of the bean rust Uromyces appendiculatus

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17922518

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1002/PMIC.200700419

1 reference

release_xxmcyfqtqjc2tigxrkapnxtvaq

28 July 2017

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/xxmcyfqtqjc2tigxrkapnxtvaq

24 November 2022

mapped directly with Wikidata item

PMC publication ID

2810652

1 reference

28 July 2017

1 reference