NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks (Q33910803)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

title

NAP: The Network Analysis Profiler, a web tool for easier topological analysis and comparison of medium-scale biological networks (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Georgios A. Pavlopoulos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

author name string

Theodosios Theodosiou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Georgios Efstathiou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Nikolas Papanikolaou

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Pantelis G Bagos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

Ioannis Iliopoulos

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

language of work or name

1 reference

14 July 2017

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

volume

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

issue

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

page(s)

278

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

25 March 2020

Cytoscape

object named as

Cytoscape

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

cites work

SNAP: A General Purpose Network Analysis and Graph Mining Library

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Cytoscape.js: a graph theory library for visualisation and analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Visualizing genome and systems biology: technologies, tools, implementation techniques and trends, past, present and future

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Corbi: a new R package for biological network alignment and querying

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Arena3D: visualizing time-driven phenotypic differences in biological systems

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Topological analysis and interactive visualization of biological networks and protein structures

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Clustering algorithms in biomedical research: a review

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

clusterMaker: a multi-algorithm clustering plugin for Cytoscape

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Using graph theory to analyze biological networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Cytoscape Web: an interactive web-based network browser

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Visualization of omics data for systems biology

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Centrality analysis methods for biological networks and their application to gene regulatory networks.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

A survey of visualization tools for biological network analysis

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Arena3D: visualization of biological networks in 3D.

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

NeAT: a toolbox for the analysis of biological networks, clusters, classes and pathways

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Cross-species analysis of biological networks by Bayesian alignment

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Proteome survey reveals modularity of the yeast cell machinery

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Cytoscape: a software environment for integrated models of biomolecular interaction networks

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

An efficient algorithm for large-scale detection of protein families

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Functional organization of the yeast proteome by systematic analysis of protein complexes

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5513407

Functional and topological characterization of protein interaction networks

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13104-017-2607-8

ZoomOut: Analyzing Multiple Networks as Single Nodes

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1186%2FS13104-017-2607-8

10.1186/S13104-017-2607-8

21 January 2018

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

Dimensions Publication ID

25 March 2020

1 reference

https://scigraph.springernature.com/pub.10.1186/s13104-017-2607-8

9 September 2019

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json

25 March 2020

PubMed publication ID

28705239

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:28705239%20AND%20SRC:MED&resulttype=core&format=json