A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis (Q33883118)

29 July 2017

title

A large-scale benchmark study of existing algorithms for taxonomy-independent microbial community analysis (English)

1 reference

29 July 2017

0 references

Rob Knight

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Susan M Huse

1 reference

29 July 2017

Yijun Sun

1 reference

29 July 2017

Yunpeng Cai

1 reference

29 July 2017

William G Farmerie

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29 July 2017

Xiaoyu Wang

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29 July 2017

Volker Mai

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29 July 2017

publication date

27 April 2011

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Briefings in Bioinformatics

29 July 2017

published in

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29 July 2017

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29 July 2017

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29 July 2017

page(s)

107-121

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ESPRIT-Tree: hierarchical clustering analysis of millions of 16S rRNA pyrosequences in quasilinear computational time

29 July 2017

cites work

1 reference

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Advanced computational algorithms for microbial community analysis using massive 16S rRNA sequence data

5 July 2018

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Search and clustering orders of magnitude faster than BLAST

5 July 2018

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The effects of alignment quality, distance calculation method, sequence filtering, and region on the analysis of 16S rRNA gene-based studies

5 July 2018

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Composition, variability, and temporal stability of the intestinal microbiota of the elderly

5 July 2018

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QIIME allows analysis of high-throughput community sequencing data

5 July 2018

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Alignment and clustering of phylogenetic markers--implications for microbial diversity studies

5 July 2018

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Ironing out the wrinkles in the rare biosphere through improved OTU clustering

5 July 2018

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5 July 2018

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5 July 2018

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

5 July 2018

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Accurate determination of microbial diversity from 454 pyrosequencing data

5 July 2018

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ESPRIT: estimating species richness using large collections of 16S rRNA pyrosequences

5 July 2018

1 reference

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Human gut microbiota in obesity and after gastric bypass

5 July 2018

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A core gut microbiome in obese and lean twins

5 July 2018

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The Ribosomal Database Project: improved alignments and new tools for rRNA analysis

5 July 2018

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5 July 2018

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Molecular-phylogenetic characterization of microbial community imbalances in human inflammatory bowel diseases

5 July 2018

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Environmental shotgun sequencing: its potential and challenges for studying the hidden world of microbes

5 July 2018

1 reference

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

5 July 2018

1 reference

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NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

5 July 2018

1 reference

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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251834

MAFFT version 5: improvement in accuracy of multiple sequence alignment

5 July 2018

1 reference

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MUSCLE: multiple sequence alignment with high accuracy and high throughput

5 July 2018

1 reference

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How many species of prokaryotes are there?

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251834

Clustering of highly homologous sequences to reduce the size of large protein databases

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251834

Basic local alignment search tool

5 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3251834

Pyrosequencing analysis of the oral microflora of healthy adults

5 July 2018

1 reference

Crossref

https://api.crossref.org/works/10.1093%2FBIB%2FBBR009

Hierarchical Grouping to Optimize an Objective Function

21 January 2018

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Crossref

https://api.crossref.org/works/10.1093%2FBIB%2FBBR009

The development and impact of 454 sequencing

21 January 2018

1 reference

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https://pubmed.ncbi.nlm.nih.gov/21525143

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1093/BIB/BBR009

1 reference

29 July 2017

DBLP publication ID

journals/bib/SunCHKFWM12

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

29 July 2017

1 reference