Alignment and clustering of phylogenetic markers--implications for microbial diversity studies (Q33545455)

From Wikidata

Jump to navigation Jump to search

scientific article

Alignment and clustering of phylogenetic markers - implications for microbial diversity studies

Language	Label	Description	Also known as
English	Alignment and clustering of phylogenetic markers--implications for microbial diversity studies	scientific article	Alignment and clustering of phylogenetic markers - implications for microbial diversity studies

Statements

scholarly article

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Alignment and clustering of phylogenetic markers--implications for microbial diversity studies (English)

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

1 reference

based on heuristic

inferred from title

1 reference

based on heuristic

inferred from title

microbial diversity

1 reference

based on heuristic

inferred from title

6

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

author name string

James R White

1

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Saket Navlakha

2

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Niranjan Nagarajan

3

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Mohammad-Reza Ghodsi

4

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

Carl Kingsford

5

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

24 March 2010

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

BMC Bioinformatics

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

11

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

1

1 reference

23 June 2019

152

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

The effect of diet on the human gut microbiome: a metagenomic analysis in humanized gnotobiotic mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Statistical methods for detecting differentially abundant features in clinical metagenomic samples

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

A core gut microbiome in obese and lean twins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

The pervasive effects of an antibiotic on the human gut microbiota, as revealed by deep 16S rRNA sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

A diversity profile of the human skin microbiota

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Diversity of microbes associated with the marine sponge, Haliclona simulans, isolated from Irish waters and identification of polyketide synthase genes from the sponge metagenome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Metagenomic and functional analysis of hindgut microbiota of a wood-feeding higher termite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

The human microbiome project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Microbial population structures in the deep marine biosphere

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Geographical distribution and diversity of bacteria associated with natural populations of Drosophila melanogaster.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

An obesity-associated gut microbiome with increased capacity for energy harvest

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Microbial diversity in the deep sea and the underexplored "rare biosphere"

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Toward a census of bacteria in soil

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

NAST: a multiple sequence alignment server for comparative analysis of 16S rRNA genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Greengenes, a chimera-checked 16S rRNA gene database and workbench compatible with ARB

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Bacterial diversity in tree canopies of the Atlantic forest.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Bioinformatics for whole-genome shotgun sequencing of microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Diversity of the human intestinal microbial flora

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

The Ribosomal Database Project (RDP-II): sequences and tools for high-throughput rRNA analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

MUSCLE: a multiple sequence alignment method with reduced time and space complexity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

ARB: a software environment for sequence data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Cultivation of globally distributed soil bacteria from phylogenetic lineages previously only detected in cultivation-independent surveys

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Exploring prokaryotic diversity in the genomic era

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

21 June 2018

Finding biologically accurate clusterings in hierarchical tree decompositions using the variation of information.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2859756

31 October 2018

Identifiers

10.1186/1471-2105-11-152

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

DBLP publication ID

journals/bmcbi/WhiteNNGKP10

1 reference

DBLP Dataset 2021-01-02

28 January 2021

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

PubMed publication ID

1 reference

Europe PubMed Central

PubMed publication ID

27 July 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q33545455&oldid=2195472322"