Improving protein secondary structure prediction based on short subsequences with local structure similarity (Q33766762)

29 July 2017

title

Improving protein secondary structure prediction based on short subsequences with local structure similarity (English)

1 reference

protein structure prediction

29 July 2017

main subject

0 references

protein structure

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protein secondary structure

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

19 November 2024

Hsin-Nan Lin

1 reference

29 July 2017

Ting-Yi Sung

series ordinal

1 reference

29 July 2017

Shinn-Ying Ho

series ordinal

1 reference

29 July 2017

Wen-Lian Hsu

series ordinal

1 reference

29 July 2017

language of work or name

English

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publication date

2 December 2010

1 reference

full work available at URL

29 July 2017

https://bmcgenomics.biomedcentral.com/counter/pdf/10.1186/1471-2164-11-S4-S4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

http://www.biomedcentral.com/1471-2164/11_suppl_4/S4/abstract

19 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

http://www.biomedcentral.com/1471-2164/11_suppl_4/S4

19 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

http://www.biomedcentral.com/content/pdf/1471-2164-11_suppl_4-S4.pdf

19 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

https://europepmc.org/articles/PMC3005913

19 November 2024

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

https://europepmc.org/articles/PMC3005913?pdf=render

19 November 2024

content deliverer

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?resulttype=core&format=json&query=SRC%3AMED%20AND%20EXT_ID%3A21143813

https://link.springer.com/content/pdf/10.1186/1471-2164-11-S4-S4.pdf

19 November 2024

1 reference

10.1186/1471-2164-11-S4-S4

Crossref

DOI

https://api.crossref.org/works/10.1186/1471-2164-11-S4-S4

19 November 2024

1 reference

29 July 2017

volume

11 Suppl 4

1 reference

29 July 2017

1 reference

Prediction of protein secondary structure by mining structural fragment database

29 July 2017

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Protein subcellular localization prediction based on compartment-specific features and structure conservation

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Inferring function using patterns of native disorder in proteins

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Achieving 80% ten-fold cross-validated accuracy for secondary structure prediction by large-scale training.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Rapid detection of similarity in protein structure and function through contact metric distances

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

MUPRED: a tool for bridging the gap between template based methods and sequence profile based methods for protein secondary structure prediction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Improving the accuracy of protein secondary structure prediction using structural alignment

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Cd-hit: a fast program for clustering and comparing large sets of protein or nucleotide sequences

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Mimicking cellular sorting improves prediction of subcellular localization

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Porter: a new, accurate server for protein secondary structure prediction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

HYPROSP: a hybrid protein secondary structure prediction algorithm--a knowledge-based approach

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Better prediction of sub-cellular localization by combining evolutionary and structural information.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Coupled prediction of protein secondary and tertiary structure

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Critically assessing the state-of-the-art in protein structure prediction.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Getting the most from PSI-BLAST.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

CAFASP2: the second critical assessment of fully automated structure prediction methods

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Review: protein secondary structure prediction continues to rise.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Protein secondary structure prediction based on position-specific scoring matrices

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

A modified definition of Sov, a segment-based measure for protein secondary structure prediction assessment.

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

JPred: a consensus secondary structure prediction server

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Hidden Markov models for detecting remote protein homologies

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Protein secondary structure prediction using local alignments

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Seventy-five percent accuracy in protein secondary structure prediction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Redefining the goals of protein secondary structure prediction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Prediction of protein secondary structure by combining nearest-neighbor algorithms and multiple sequence alignments

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Finding motifs in protein secondary structure for use in function prediction

22 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Does secondary structure determine tertiary structure in proteins?

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Protein secondary structure prediction based on an improved support vector machines approach

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Secondary structure prediction with support vector machines

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

Third generation prediction of secondary structures.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

An analysis of the helix-to-strand transition between peptides with identical sequence.

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

A protein taxonomy based on secondary structure

30 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3005913

BAliBASE 3.0: latest developments of the multiple sequence alignment benchmark

30 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21143813

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Alignments grow, secondary structure prediction improves

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21143813

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-11-S4-S4

1 reference

Dimensions Publication ID

29 July 2017

0 references

1 reference

29 July 2017

1 reference