Redefining the goals of protein secondary structure prediction (Q40804921)

23 September 2017

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title

Redefining the goals of protein secondary structure prediction (English)

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protein structure prediction

23 September 2017

main subject

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author name string

Rost B

series ordinal

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23 September 2017

Sander C

series ordinal

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23 September 2017

Schneider R

series ordinal

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23 September 2017

language of work or name

English

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publication date

1 January 1994

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Journal of Molecular Biology

23 September 2017

published in

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23 September 2017

volume

235

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23 September 2017

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23 September 2017

page(s)

13-26

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Principles that govern the folding of protein chains

23 September 2017

cites work

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The SWISS-PROT protein sequence data bank.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Polarity as a criterion in protein design

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Predicted Secondary Structure for the Src Homology 3 Domain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The Protein Data Bank: a computer-based archival file for macromolecular structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Secondary structure prediction: combination of three different methods.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Between objectivity and subjectivity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of Conformations of Amino Acid Residues and Prediction of Backbone Topography in Proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The relation between the divergence of sequence and structure in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Conformational parameters for amino acids in helical, beta-sheet, and random coil regions calculated from proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Secondary structure assignment for alpha/beta proteins by a combinatorial approach.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Turn prediction in proteins using a pattern-matching approach

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Comparison of three algorithms for the assignment of secondary structure in proteins: the advantages of a consensus assignment.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Statistical analysis of the correlation among amino acid residues in helical, beta-structural and non-regular regions of globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The nitrogenase MoFe protein. A secondary structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Selection of representative protein data sets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Fast and simple Monte Carlo algorithm for side chain optimization in proteins: application to model building by homology

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

A database of protein structure families with common folding motifs

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The Greek key motif: extraction, classification and analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

The influence of nearest-neighboring amino acid residues on aspects of secondary structure of proteins. Attempts to locate ?-helices and ?-sheets

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

How good are predictions of protein secondary structure?

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Machine learning approach for the prediction of protein secondary structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Improvements in protein secondary structure prediction by an enhanced neural network

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

An algorithm for secondary structure determination in proteins based on sequence similarity

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Accurate modeling of protein conformation by automatic segment matching

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Structural principles of the globular organization of protein chains. A stereochemical theory of globular protein secondary structure.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Comparison of the predicted and observed secondary structure of T4 phage lysozyme

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Status of empirical methods for the prediction of protein backbone topography

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Improvements in the prediction of protein backbone topography by reduction of statistical errors

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Protein secondary structure prediction using logic-based machine learning

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Logical analysis of the mechanism of protein folding. I. Predictions of helices, loops and beta-structures from primary structure

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Triplet information in helix prediction applied to the analysis of super-secondary structures

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Logical analysis of the mechanism of protein folding III. Prediction of the strong long-range interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Predicting protein secondary structure based on amino acid sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the Code Relating Sequence to Secondary Structure in Proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Deconvolution of the circular dichroism spectra of proteins: the circular dichroism spectra of the antiparallel beta-sheet in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Empirical Protein Energy Maps

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

A segment-based approach to protein secondary structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Theory of protein secondary structure and algorithm of its prediction.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Predicting the secondary structure of globular proteins using neural network models

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of code relating sequences to conformation in globular proteins. Theory and application of expected information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Conformational properties of amino acid residues in globular proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Protein structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the code relating sequence to conformation in proteins: Possible implications for the mechanism of formation of helical regions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the code relating sequence to conformation in globular proteins. An informational analysis of the role of the residue in determining the conformation of its neighbours in the primary sequence

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the code relating sequence to conformation in globular proteins. Development of a stereochemical alphabet on the basis of intra-residue information

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Analysis of the code relating sequence to conformation in globular proteins. The distribution of residue pairs in turns and kinks in the backbone chain

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Extracting information on folding from the amino acid sequence: consensus regions with preferred conformation in homologous proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Prediction of protein backbone conformation based on seven structure assignments. Influence of local interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Extracting information on folding from the amino acid sequence: accurate predictions for protein regions with preferred conformation in the absence of tertiary interactions

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Prediction of protein secondary structure at better than 70% accuracy

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Predicting protein secondary structure with a nearest-neighbor algorithm.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Database of homology-derived protein structures and the structural meaning of sequence alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Describing protein structure: a general algorithm yielding complete helicoidal parameters and a unique overall axis.

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Structural analysis based on state-space modeling

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Modeling of globular proteins. A distance-based data search procedure for the construction of insertion/deletion regions and Pro----non-Pro mutations

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

7 January 2021

New paths from dead ends

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

A holistic approach to protein structure alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Protein structure alignment

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Prediction of super-secondary structure in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Recognition of super-secondary structure in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Protein structure. Prediction of progress at last

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Detection of common three-dimensional substructures in proteins

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Beta-turns and their distortions: a proposed new nomenclature

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Detection of secondary structure elements in proteins by hydrophobic cluster analysis

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Hybrid system for protein secondary structure prediction

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Prediction of protein secondary structure and active sites using the alignment of homologous sequences

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

Experimental and Theoretical Aspects of Protein Folding

7 January 2021

1 reference

https://api.crossref.org/works/10.1016%2FS0022-2836%2805%2980007-5

inferred from DOI database lookup

7 January 2021

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Identifiers

DOI

10.1016/S0022-2836(05)80007-5

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23 September 2017

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