A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. (Q33566434)

28 July 2017

title

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. (English)

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nearest neighbour algorithm

28 July 2017

main subject

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inferred from title

author

Thomas E. Cheatham, III

object named as

Thomas Cheatham

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28 July 2017

Alberto Perez

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Charles Laughton

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Richard Lavery

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Jiri Sponer

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Modesto Orozco

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28 July 2017

Krystyna Zakrzewska

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28 July 2017

David Beveridge

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28 July 2017

Thomas C Bishop

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28 July 2017

David A Case

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28 July 2017

Surjit Dixit

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28 July 2017

B Jayaram

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28 July 2017

Filip Lankas

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28 July 2017

John H Maddocks

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28 July 2017

Alexis Michon

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28 July 2017

Roman Osman

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28 July 2017

Tanya Singh

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28 July 2017

Nada Spackova

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28 July 2017

language of work or name

English

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publication date

22 October 2009

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28 July 2017

published in

Nucleic Acids Research

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28 July 2017

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28 July 2017

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28 July 2017

page(s)

299-313

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Conformational analysis of nucleic acids revisited: Curves+

28 July 2017

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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21 January 2018

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The missing term in effective pair potentials

21 January 2018

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Numerical integration of the cartesian equations of motion of a system with constraints: molecular dynamics of n-alkanes

21 January 2018

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CURVATURE: software for the analysis of curved DNA.

21 January 2018

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Molecular dynamics with coupling to an external bath

31 October 2018

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Sequence-Dependent Conformational Energy of DNA Derived from Molecular Dynamics Simulations: Toward Understanding the Indirect Readout Mechanism in Protein−DNA Recognition

21 January 2018

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A modified version of the Cornell et al. force field with improved sugar pucker phases and helical repeat

21 January 2018

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12 December 2020

Structural bioinformatics of DNA: a web-based tool for the analysis of molecular dynamics results and structure prediction

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12 December 2020

Assessment of the molecular dynamics structure of DNA in solution based on calculated and observed NMR NOESY volumes and dihedral angles from scalar coupling constants

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12 December 2020

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12 December 2020

Mechanics of sequence-dependent stacking of bases in B-DNA

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12 December 2020

Identifiers

DOI

10.1093/NAR/GKP834

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28 July 2017

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28 July 2017

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