Pages that link to "Q33566434"
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The following pages link to A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA. (Q33566434):
Displaying 50 items.
- The role of methylation in the intrinsic dynamics of B- and Z-DNA (Q21134614) (← links)
- Convergence and reproducibility in molecular dynamics simulations of the DNA duplex d(GCACGAACGAACGAACGC) (Q27332083) (← links)
- DNA Sequence Context Conceals α-Anomeric Lesions (Q27676629) (← links)
- Molecular dynamics re-refinement of two different small RNA loop structures using the original NMR data suggest a common structure (Q27681249) (← links)
- Using sequence-specific chemical and structural properties of DNA to predict transcription factor binding sites (Q28476187) (← links)
- Development of an informatics infrastructure for data exchange of biomolecular simulations: Architecture, data models and ontology (Q28606604) (← links)
- Blind tests of RNA nearest-neighbor energy prediction (Q28828288) (← links)
- Recognition of methylated DNA through methyl-CpG binding domain proteins. (Q30512312) (← links)
- Label-free, atomic force microscopy-based mapping of DNA intrinsic curvature for the nanoscale comparative analysis of bent duplexes (Q30514563) (← links)
- Conformational dynamics of the human propeller telomeric DNA quadruplex on a microsecond time scale. (Q30584761) (← links)
- Structure, Stiffness and Substates of the Dickerson-Drew Dodecamer. (Q30663429) (← links)
- Quantum mechanically derived AMBER-compatible heme parameters for various states of the cytochrome P450 catalytic cycle (Q31035806) (← links)
- Physico-chemical fingerprinting of RNA genes (Q33580410) (← links)
- Substrate recognition and specificity of double-stranded RNA binding proteins (Q33733307) (← links)
- A statistical thermodynamic model for investigating the stability of DNA sequences from oligonucleotides to genomes (Q33736568) (← links)
- An ensemble of B-DNA dinucleotide geometries lead to characteristic nucleosomal DNA structure and provide plasticity required for gene expression (Q33786176) (← links)
- Analyzing ion distributions around DNA. (Q33843177) (← links)
- A measure of bending in nucleic acids structures applied to A-tract DNA. (Q33889278) (← links)
- ICM Web: the interactive chromatin modeling web server (Q33957654) (← links)
- Disparate HDV ribozyme crystal structures represent intermediates on a rugged free-energy landscape (Q33967967) (← links)
- Physical properties of naked DNA influence nucleosome positioning and correlate with transcription start and termination sites in yeast (Q34043829) (← links)
- The structural code of cyanobacterial genomes. (Q34044460) (← links)
- Simulations of DNA topoisomerase 1B bound to supercoiled DNA reveal changes in the flexibility pattern of the enzyme and a secondary protein-DNA binding site (Q34044496) (← links)
- Toward a consensus view of duplex RNA flexibility (Q34134724) (← links)
- What does physics have to do with cancer? (Q34208808) (← links)
- Unraveling the sequence-dependent polymorphic behavior of d(CpG) steps in B-DNA (Q34312985) (← links)
- Triple helical DNA in a duplex context and base pair opening (Q34313076) (← links)
- The ABCs of molecular dynamics simulations on B-DNA, circa 2012. (Q34323341) (← links)
- On the absence of intrahelical DNA dynamics on the μs to ms timescale (Q34433149) (← links)
- cgDNA: a software package for the prediction of sequence-dependent coarse-grain free energies of B-form DNA (Q34489622) (← links)
- DNA Duplex Formation with a Coarse-Grained Model (Q34503120) (← links)
- μABC: a systematic microsecond molecular dynamics study of tetranucleotide sequence effects in B-DNA (Q34510040) (← links)
- Sanjeevini: a freely accessible web-server for target directed lead molecule discovery (Q34530633) (← links)
- The effect of a G:T mispair on the dynamics of DNA (Q34555663) (← links)
- NAFlex: a web server for the study of nucleic acid flexibility. (Q34728020) (← links)
- Explaining the varied glycosidic conformational, G-tract length and sequence preferences for anti-parallel G-quadruplexes (Q35017806) (← links)
- Working the kinks out of nucleosomal DNA (Q35038174) (← links)
- Understanding the connection between epigenetic DNA methylation and nucleosome positioning from computer simulations (Q35052996) (← links)
- Analyzing ion distributions around DNA: sequence-dependence of potassium ion distributions from microsecond molecular dynamics. (Q35131148) (← links)
- VDNA: the virtual DNA plug-in for VMD. (Q35198629) (← links)
- From crystal and NMR structures, footprints and cryo-electron-micrographs to large and soft structures: nanoscale modeling of the nucleosomal stem. (Q35620839) (← links)
- Molecular dynamics of a DNA Holliday junction: the inverted repeat sequence d(CCGGTACCGG)₄. (Q35743231) (← links)
- Simple Elastic Network Models for Exhaustive Analysis of Long Double-Stranded DNA Dynamics with Sequence Geometry Dependence (Q35857012) (← links)
- Understanding the structural and dynamic consequences of DNA epigenetic modifications: computational insights into cytosine methylation and hydroxymethylation (Q36213675) (← links)
- Parmbsc1: a refined force field for DNA simulations (Q36428161) (← links)
- Multiscale modeling of double-helical DNA and RNA: a unification through Lie groups (Q36801979) (← links)
- Onco-Regulon: an integrated database and software suite for site specific targeting of transcription factors of cancer genes (Q37166444) (← links)
- Molecular Mechanism of Processive 3' to 5' RNA Translocation in the Active Subunit of the RNA Exosome Complex (Q37184211) (← links)
- Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations. (Q37232051) (← links)
- Long-range correlations in the mechanics of small DNA circles under topological stress revealed by multi-scale simulation (Q37401128) (← links)