Bioinformatics for whole-genome shotgun sequencing of microbial communities (Q21145697)

PubMed

PubMed publication ID

17 August 2022

Kevin Chen

Kevin

Chen

1 reference

PubMed

PubMed publication ID

16110337

PLOS Computational Biology

17 August 2022

language of work or name

English

0 references

publication date

July 2005

0 references

published in

0 references

volume

0 references

issue

0 references

page(s)

106-12

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Creative Commons Attribution 4.0 International

start time

1 January 2005

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

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Whole-Genome Shotgun Assembly and Analysis of the Genome of Fugu rubripes

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An initial strategy for the systematic identification of functional elements in the human genome by low-redundancy comparative sequencing

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Comparative metagenomics of microbial communities

19 March 2017

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Community structure and metabolism through reconstruction of microbial genomes from the environment

7 April 2017

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Metagenomics: application of genomics to uncultured microorganisms

7 April 2017

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7 April 2017

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A whole-genome assembly of Drosophila

7 April 2017

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Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

7 April 2017

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Microbial community genomics in the ocean

7 April 2017

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12 September 2017

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Substrate-induced gene-expression screening of environmental metagenome libraries for isolation of catabolic genes

12 September 2017

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Metagenomics: genomic analysis of microbial communities

12 September 2017

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Metagenomics--the key to the uncultured microbes

12 September 2017

1 reference

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Reverse methanogenesis: testing the hypothesis with environmental genomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Uncultured soil bacteria are a reservoir of new antibiotic resistance genes

12 September 2017

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Application of tetranucleotide frequencies for the assignment of genomic fragments

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Different SAR86 subgroups harbour divergent proteorhodopsins

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Fine-scale phylogenetic architecture of a complex bacterial community.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Molecular microbial ecology: land of the one-eyed king

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

To BAC or not to BAC: marine ecogenomics

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

MAVID: constrained ancestral alignment of multiple sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Environmental genomics, the big picture?

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Metagenomic analyses of an uncultured viral community from human feces

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

A Census of rRNA Genes and Linked Genomic Sequences within a Soil Metagenomic Library

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Informatics for unveiling hidden genome signatures

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Recombinant environmental libraries provide access to microbial diversity for drug discovery from natural products

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Microbial population genomics and ecology

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Fragmentary taxa, missing data, and ambiguity: mistaken assumptions and conclusions

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Genomic signature: characterization and classification of species assessed by chaos game representation of sequences

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Genome signature comparisons among prokaryote, plasmid, and mitochondrial DNA

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Self-identification of protein-coding regions in microbial genomes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Microbial ecology and evolution: a ribosomal RNA approach

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Analysis of the virus population present in equine faeces indicates the presence of hundreds of uncharacterized virus genomes.

12 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Comparative genome assembly.

30 May 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Diversity and population structure of a near-shore marine-sediment viral community.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Comparative DNA analysis across diverse genomes.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

How to interpret an anonymous bacterial genome: machine learning approach to gene identification.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

On global sequence alignment.

29 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1185649

Rainbow: a toolbox for phylogenetic supertree construction and analysis

29 November 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/16110337

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PCBI.0010024

1 reference

DBLP publication ID

journals/ploscb/ChenP05

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

16110337

1 reference