Intronic Alus influence alternative splicing (Q33372114)

26 July 2017

title

Intronic Alus influence alternative splicing (English)

1 reference

alternative mRNA splicing, via spliceosome

26 July 2017

main subject

1 reference

Erez Y Levanon

0 references

Noa Sela

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Galit Lev-Maor

1 reference

26 July 2017

Oren Ram

1 reference

26 July 2017

Eddo Kim

1 reference

26 July 2017

Amir Goren

1 reference

26 July 2017

Gil Ast

1 reference

26 July 2017

publication date

26 September 2008

1 reference

26 July 2017

1 reference

26 July 2017

1 reference

26 July 2017

1 reference

26 July 2017

page(s)

e1000204

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Creative Commons Attribution 4.0 International

26 July 2017

start time

26 September 2008

1 reference

April 2022 Public Data File from Crossref

copyrighted

0 references

describes a project that uses

ImageJ

1 reference

11 June 2022

https://www.ebi.ac.uk/europepmc/webservices/rest/PMC2533698/fullTextXML

based on heuristic

inferred from PubMed Central ID database lookup

cites work

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21 June 2018

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Multifactorial interplay controls the splicing profile of Alu-derived exons

21 June 2018

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Alternative splicing of Alu exons--two arms are better than one

21 June 2018

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RNA editing in regulating gene expression in the brain

21 June 2018

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21 June 2018

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Pre-mRNA secondary structures influence exon recognition.

21 June 2018

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21 June 2018

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21 June 2018

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Comparative analysis of transposed element insertion within human and mouse genomes reveals Alu's unique role in shaping the human transcriptome.

21 June 2018

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RNA structure is a key regulatory element in pathological ATM and CFTR pseudoexon inclusion events

21 June 2018

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The emergence of alternative 3' and 5' splice site exons from constitutive exons

21 June 2018

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RNA-editing-mediated exon evolution

21 June 2018

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Evolutionary history of 7SL RNA-derived SINEs in Supraprimates

21 June 2018

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Processing of intronic microRNAs

21 June 2018

1 reference

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Modulating role of RNA structure in alternative splicing of a critical exon in the spinal muscular atrophy genes.

21 June 2018

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Different levels of alternative splicing among eukaryotes

21 June 2018

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RNA editing level in the mouse is determined by the genomic repeat repertoire

21 June 2018

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Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

21 June 2018

1 reference

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

21 June 2018

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Extensive adenosine-to-inosine editing detected in Alu repeats of antisense RNAs reveals scarcity of sense-antisense duplex formation

21 June 2018

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The expanding transcriptome: the genome as the 'Book of Sand'

21 June 2018

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Unusual intron conservation near tissue-regulated exons found by splicing microarrays

21 June 2018

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The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

21 June 2018

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Mutually exclusive splicing of the insect Dscam pre-mRNA directed by competing intronic RNA secondary structures

21 June 2018

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21 June 2018

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21 June 2018

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Dichotomous splicing signals in exon flanks

21 June 2018

1 reference

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Waste not, want not--transcript excess in multicellular eukaryotes

21 June 2018

1 reference

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SINEs point to abundant editing in the human genome

21 June 2018

1 reference

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Systematic identification and analysis of exonic splicing silencers.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Influence of RNA secondary structure on the pre-mRNA splicing process

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

A survey of RNA editing in human brain

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Widespread A-to-I RNA editing of Alu-containing mRNAs in the human transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

How did alternative splicing evolve?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Widespread RNA editing of embedded alu elements in the human transcriptome

21 June 2018

1 reference

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From "junk" to gene: curriculum vitae of a primate receptor isoform gene

21 June 2018

1 reference

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Systematic identification of abundant A-to-I editing sites in the human transcriptome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Transcriptome and genome conservation of alternative splicing events in humans and mice.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

How prevalent is functional alternative splicing in the human genome?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

RNA folding affects the recruitment of SR proteins by mouse and human polypurinic enhancer elements in the fibronectin EDA exon

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Conserved sequence elements associated with exon skipping

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Predictive identification of exonic splicing enhancers in human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alu-containing exons are alternatively spliced

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

RNA hairpins in noncoding regions of human brain and Caenorhabditis elegans mRNA are edited by adenosine deaminases that act on RNA.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Common exon duplication in animals and its role in alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

RNA editing by adenosine deaminases that act on RNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alu repeats and human genomic diversity

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alternative splicing: increasing diversity in the proteomic world

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Human genomic sequences that inhibit splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alternative pre-mRNA splicing: the logic of combinatorial control

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

EID: the Exon-Intron Database-an exhaustive database of protein-coding intron-containing genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

De novo alu-element insertions in FGFR2 identify a distinct pathological basis for Apert syndrome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Intron self-complementarity enforces exon inclusion in a yeast pre-mRNA

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

RNA editing of AMPA receptor subunit GluR-B: a base-paired intron-exon structure determines position and efficiency

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alu sequences in the coding regions of mRNA: a source of protein variability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Intron sequence directs RNA editing of the glutamate receptor subunit GluR2 coding sequence

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Alternative splicing caused by RNA secondary structure.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Evolution of the master Alu gene(s)

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

A de novo Alu insertion results in neurofibromatosis type 1

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

Is abundant A-to-I RNA editing primate-specific?

21 June 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Evidence for control of splicing by alternative RNA secondary structures in Dipteran homothorax pre-mRNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

A Non-sequence-specific double-stranded RNA structural element regulates splicing of two mutually exclusive exons of fibroblast growth factor receptor 2 (FGFR2).

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Exon skipping caused by an intronic insertion of a young Alu Yb9 element leads to severe hemophilia A.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Inactivation of the Fas gene by Alu insertion: retrotransposition in an intron causing splicing variation and autoimmune lymphoproliferative syndrome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Unproductive splicing of SR genes associated with highly conserved and ultraconserved DNA elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Fixation of conserved sequences shapes human intron size and influences transposon-insertion dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Estimating the retrotransposition rate of human Alu elements

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

Comparative analysis detects dependencies among the 5' splice-site positions

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PGEN.1000204

AluY insertion (IVS4-52ins316alu) in the glycerol kinase gene from an individual with benign glycerol kinase deficiency

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

A standardized nomenclature for adenosine deaminases that act on RNA

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2533698

10.1371/JOURNAL.PGEN.1000204

31 October 2018

Identifiers

DOI

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26 July 2017

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26 July 2017

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