The "alternative" choice of constitutive exons throughout evolution (Q33306111)

25 July 2017

title

The "alternative" choice of constitutive exons throughout evolution (English)

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25 July 2017

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25 July 2017

Adi Doron-Faigenboim

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Noa Sela

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Galit Lev-Maor

1 reference

25 July 2017

Amir Goren

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25 July 2017

Eddo Kim

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25 July 2017

Hadas Keren

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25 July 2017

Adi Doron-Faigenboim

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25 July 2017

Shelly Leibman-Barak

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25 July 2017

Gil Ast

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25 July 2017

publication date

1 November 2007

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25 July 2017

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25 July 2017

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25 July 2017

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25 July 2017

page(s)

e203

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Creative Commons Attribution 4.0 International

25 July 2017

start time

16 November 2007

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April 2022 Public Data File from Crossref

copyrighted

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cites work

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The emergence of alternative 3' and 5' splice site exons from constitutive exons

21 June 2018

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Different levels of alternative splicing among eukaryotes

21 June 2018

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Comparison of multiple vertebrate genomes reveals the birth and evolution of human exons

21 June 2018

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Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

21 June 2018

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Differentiated evolutionary rates in alternative exons and the implications for splicing regulation

21 June 2018

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21 June 2018

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Alternative splicing and RNA selection pressure--evolutionary consequences for eukaryotic genomes

21 June 2018

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21 June 2018

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21 June 2018

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The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

21 June 2018

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Characteristics and regulatory elements defining constitutive splicing and different modes of alternative splicing in human and mouse

21 June 2018

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Origin and evolution of new exons in rodents

21 June 2018

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Assessing the application of Ka/Ks ratio test to alternatively spliced exons

21 June 2018

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Molecular cloning and characterization of AAAS-V2, a novel splice variant of human AAAS

21 June 2018

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Global analysis of positive and negative pre-mRNA splicing regulators in Drosophila

21 June 2018

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Familial dysautonomia: a review of the current pharmacological treatments

21 June 2018

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Identification and analysis of alternative splicing events conserved in human and mouse

21 June 2018

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MAFFT version 5: improvement in accuracy of multiple sequence alignment

21 June 2018

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Systematic identification and analysis of exonic splicing silencers.

21 June 2018

1 reference

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How did alternative splicing evolve?

21 June 2018

1 reference

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Variation in sequence and organization of splicing regulatory elements in vertebrate genes

21 June 2018

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From "junk" to gene: curriculum vitae of a primate receptor isoform gene

21 June 2018

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A non-EST-based method for exon-skipping prediction

21 June 2018

1 reference

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Minimal conditions for exonization of intronic sequences: 5' splice site formation in alu exons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Transcriptome and genome conservation of alternative splicing events in humans and mice.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Zebrafish serotonin-N-acetyltransferase-2 gene regulation: pineal-restrictive downstream module contains a functional E-box and three photoreceptor conserved elements

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

How prevalent is functional alternative splicing in the human genome?

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Exon repetition: a major pathway for processing mRNA of some genes is allele-specific

21 June 2018

1 reference

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Smac3, a Novel Smac/DIABLO Splicing Variant, Attenuates the Stability and Apoptosis-inhibiting Activity of X-linked Inhibitor of Apoptosis Protein

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

ESEfinder: A web resource to identify exonic splicing enhancers

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

The birth of an alternatively spliced exon: 3' splice-site selection in Alu exons

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

LAGAN and Multi-LAGAN: efficient tools for large-scale multiple alignment of genomic DNA

21 June 2018

1 reference

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Mechanisms of alternative pre-messenger RNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Evolution of alternative splicing: deletions, insertions and origin of functional parts of proteins from intron sequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Initial sequencing and comparative analysis of the mouse genome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Pineal-specific expression of green fluorescent protein under the control of the serotonin-N-acetyltransferase gene regulatory regions in transgenic zebrafish

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Transcriptional activators differ in their abilities to control alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Predictive identification of exonic splicing enhancers in human genes

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Alu-containing exons are alternatively spliced

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Common exon duplication in animals and its role in alternative splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

The human genome browser at UCSC

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

The K(A)/K(S) ratio test for assessing the protein-coding potential of genomic regions: an empirical and simulation study

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

A computational analysis of sequence features involved in recognition of short introns

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Alternative splicing: increasing diversity in the proteomic world

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Statistical methods for detecting molecular adaptation

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

PAML: a program package for phylogenetic analysis by maximum likelihood

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Directing alternative splicing: cast and scenarios

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Alu sequences in the coding regions of mRNA: a source of protein variability

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

RNA splice junctions of different classes of eukaryotes: sequence statistics and functional implications in gene expression

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

On "genomenclature": a comprehensive (and respectful) taxonomy for pseudogenes and other "junk DNA"

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Systematic genome-wide annotation of spliceosomal proteins reveals differential gene family expansion

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Comparative analysis detects dependencies among the 5' splice-site positions

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Alternative splicing in the human, mouse and rat genomes is associated with an increased frequency of exon creation and/or loss

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2077895

Alternative splicing of conserved exons is frequently species-specific in human and mouse

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18020709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Human-mouse comparative analysis reveals that branch-site plasticity contributes to splicing regulation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18020709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

The olfactory placodes of the zebrafish form by convergence of cellular fields at the edge of the neural plate

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18020709

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1371/JOURNAL.PGEN.0030203

1 reference

25 July 2017

1 reference

1 reference

25 July 2017

1 reference