Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice (Q33260265)

24 July 2017

title

Statistical inference of chromosomal homology based on gene colinearity and applications to Arabidopsis and rice (English)

1 reference

24 July 2017

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Xiyin Wang

1 reference

24 July 2017

Xiaoli Shi

1 reference

24 July 2017

Zhe Li

1 reference

24 July 2017

Qihui Zhu

1 reference

24 July 2017

Lei Kong

1 reference

24 July 2017

Wen Tang

1 reference

24 July 2017

Song Ge

1 reference

24 July 2017

Jingchu Luo

1 reference

24 July 2017

publication date

12 October 2006

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24 July 2017

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24 July 2017

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24 July 2017

page(s)

447

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The sequence of rice chromosomes 11 and 12, rich in disease resistance genes and recent gene duplications

24 July 2017

cites work

1 reference

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Ancient and recent polyploidy in angiosperms

14 July 2018

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Ancient duplication of cereal genomes

14 July 2018

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Computational approaches to unveiling ancient genome duplications

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Recent developments in computational approaches for uncovering genomic homology

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Genome duplication in the teleost fish Tetraodon nigroviridis reveals the early vertebrate proto-karyotype

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Proof and evolutionary analysis of ancient genome duplication in the yeast Saccharomyces cerevisiae

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Eucaryotic genome evolution through the spontaneous duplication of large chromosomal segments

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

DiagHunter and GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Investigating ancient duplication events in the Arabidopsis genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

A recent polyploidy superimposed on older large-scale duplications in the Arabidopsis genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

The hidden duplication past of Arabidopsis thaliana

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Extensive genomic duplication during early chordate evolution

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

A Draft Sequence of the Rice Genome (Oryza sativa L. ssp. japonica)

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Comparative genomics between rice and Arabidopsis shows scant collinearity in gene order

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Allopolyploidy-induced rapid genome evolution in the wheat (Aegilops-Triticum) group

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Patterns of chromosomal duplication in maize and their implications for comparative maps of the grasses

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Genome relationships: the grass model in current research

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Molecular evidence for an ancient duplication of the entire yeast genome

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Identification of common molecular subsequences

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Date of the monocot-dicot divergence estimated from chloroplast DNA sequence data

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Duplication and DNA segmental loss in the rice genome: implications for diploidization

14 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Improving gene network inference by comparing expression time-series across species, developmental stages or tissues.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Genome duplication led to highly selective expansion of the Arabidopsis thaliana proteome.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Fugu genome analysis provides evidence for a whole-genome duplication early during the evolution of ray-finned fishes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Evidence that rice and other cereals are ancient aneuploids

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Fast identification and statistical evaluation of segmental homologies in comparative maps.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Numerous small rearrangements of gene content, order and orientation differentiate grass genomes.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

The origins of genomic duplications in Arabidopsis.

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1626491

Ancestral genome duplication in rice

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17038171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17038171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Patterns of Segmental Duplication in the Human Genome

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/17038171

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2105-7-447

1 reference

journals/bmcbi/WangSLZKTGL06

24 July 2017

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

Dimensions Publication ID

28 January 2021

0 references

1 reference

24 July 2017

1 reference