Investigating ancient duplication events in the Arabidopsis genome (Q34210351)

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English	Investigating ancient duplication events in the Arabidopsis genome	scientific article

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scholarly article

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

title

Investigating ancient duplication events in the Arabidopsis genome. (English)

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

author

Klaas Vandepoele

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2

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

Yves Van de Peer

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5

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

Cedric Simillion

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Cedric Simillion

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3

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Jeroen Raes

object named as

Jeroen Raes

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1

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author name string

Yvan Saeys

series ordinal

4

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

publication date

1 January 2003

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

published in

Journal of Structural and Functional Genomics

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

volume

3

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

issue

1-4

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

page(s)

117-129

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Europe PubMed Central

PubMed publication ID

12836691

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31 July 2017

cites work

Dealing with saturation at the amino acid level: a case study based on anciently duplicated zebrafish genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Phylogenies of developmentally important proteins do not support the hypothesis of two rounds of genome duplication early in vertebrate history

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Sequence and analysis of chromosome 4 of the plant Arabidopsis thaliana

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

Unbiased estimation of the rates of synonymous and nonsynonymous substitution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

Yesterday's polyploids and the mystery of diploidization

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Comparative mapping of Arabidopsis thaliana and Brassica oleracea chromosomes reveals islands of conserved organization

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The neighbor-joining method: a new method for reconstructing phylogenetic trees

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Molecular systematics of the Brassicaceae: evidence from coding plastidic matK and nuclear Chs sequences

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Pattern and timing of gene duplication in animal genomes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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TREECON for Windows: a software package for the construction and drawing of evolutionary trees for the Microsoft Windows environment

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The automatic detection of homologous regions (ADHoRe) and its application to microcolinearity between Arabidopsis and rice

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Genome organization in dicots: genome duplication in Arabidopsis and synteny between soybean and Arabidopsis

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Revisiting recent challenges to the ancient fish-specific genome duplication hypothesis

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Eukaryote genome duplication - where's the evidence?

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The ghost of selection past: rates of evolution and functional divergence of anciently duplicated genes.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Genome duplication, divergent resolution and speciation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

Sequence and analysis of chromosome 2 of the plant Arabidopsis thaliana

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

Comparative genomics provides evidence for an ancient genome duplication event in fish

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

An ancestral whole-genome duplication may not have been responsible for the abundance of duplicated fish genes.

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The origins of genomic duplications in Arabidopsis.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The molecular clock revisited: the rate of synonymous vs. replacement change in Drosophila.

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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GeneMark.hmm: new solutions for gene finding

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Gene and genome duplication

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Consistent variation in amino-acid substitution rate, despite uniformity of mutation rate: protein evolution in mammals is not neutral

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Homeobox genes in vertebrate evolution

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Evolution of the angiosperms: calibrating the family tree

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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The evolutionary fate and consequences of duplicate genes

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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PAML: a program package for phylogenetic analysis by maximum likelihood

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Analysis of the genome sequence of the flowering plant Arabidopsis thaliana

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Evolutionary patterns of gene families generated in the early stage of vertebrates

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Extensive duplication and reshuffling in the Arabidopsis genome

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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inferred from PubMed ID database lookup

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Estimating synonymous and nonsynonymous substitution rates under realistic evolutionary models

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Toward a unified genetic map of higher plants, transcending the monocot-dicot divergence

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Genome evolution in polyploids

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for an ancient chromosomal duplication in Arabidopsis thaliana by sequencing and analyzing a 400-kb contig at the APETALA2 locus on chromosome 4.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/12836691

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12 December 2020

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Identifiers

DOI

10.1023/A:1022666020026

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12836691

retrieved

31 July 2017

Dimensions Publication ID

1051141684

0 references

PubMed publication ID

12836691

1 reference

stated in

Europe PubMed Central

PubMed publication ID

12836691

retrieved

31 July 2017

 

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