Accurate genome relative abundance estimation based on shotgun metagenomic reads (Q31043348)

13 September 2017

Accurate genome relative abundance estimation based on shotgun metagenomic reads (English)

1 reference

13 September 2017

1 reference

Jacob A Cram

0 references

Li C Xia

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Jed A Fuhrman

1 reference

13 September 2017

Ting Chen

1 reference

13 September 2017

Fengzhu Sun

series ordinal

1 reference

13 September 2017

language of work or name

English

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publication date

6 December 2011

1 reference

13 September 2017

1 reference

13 September 2017

1 reference

13 September 2017

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13 September 2017

e27992

1 reference

Creative Commons Attribution 4.0 International

13 September 2017

start time

6 December 2011

1 reference

April 2022 Public Data File from Crossref

copyrighted

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cites work

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1 reference

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Clustering metagenomic sequences with interpolated Markov models

28 July 2018

1 reference

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A catalog of reference genomes from the human microbiome

28 July 2018

1 reference

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Signal processing for metagenomics: extracting information from the soup

28 July 2018

1 reference

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Comparative metagenomics and population dynamics of the gut microbiota in mother and infant

28 July 2018

1 reference

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A human gut microbial gene catalogue established by metagenomic sequencing

28 July 2018

1 reference

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The GAAS metagenomic tool and its estimations of viral and microbial average genome size in four major biomes

28 July 2018

1 reference

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The integrated microbial genomes system: an expanding comparative analysis resource

28 July 2018

1 reference

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The NIH Human Microbiome Project

28 July 2018

1 reference

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PerM: efficient mapping of short sequencing reads with periodic full sensitive spaced seeds

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Assembling the marine metagenome, one cell at a time

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

28 July 2018

1 reference

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TACOA: taxonomic classification of environmental genomic fragments using a kernelized nearest neighbor approach

28 July 2018

1 reference

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Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

MetaSim: a sequencing simulator for genomics and metagenomics

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

A comparison of plotless density estimators using Monte Carlo simulation on totally enumerated field data sets.

28 July 2018

1 reference

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The human microbiome project

28 July 2018

1 reference

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Comparative metagenomics revealed commonly enriched gene sets in human gut microbiomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Use of simulated data sets to evaluate the fidelity of metagenomic processing methods

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific

28 July 2018

1 reference

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Accurate phylogenetic classification of variable-length DNA fragments

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Use of 16S rRNA and rpoB genes as molecular markers for microbial ecology studies

28 July 2018

1 reference

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Metagenomic analysis of the human distal gut microbiome

28 July 2018

1 reference

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TETRA: a web-service and a stand-alone program for the analysis and comparison of tetranucleotide usage patterns in DNA sequences

28 July 2018

1 reference

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Environmental genome shotgun sequencing of the Sargasso Sea

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Capturing whole-genome characteristics in short sequences using a naïve Bayesian classifier

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Basic local alignment search tool

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3232206

Community structure and metabolism through reconstruction of microbial genomes from the environment

28 July 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

Metagenomic sequencing of an in vitro-simulated microbial community

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

CompostBin: A DNA Composition-Based Algorithm for Binning Environmental Shotgun Reads

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

Phymm and PhymmBL: metagenomic phylogenetic classification with interpolated Markov models

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

SOrt-ITEMS: Sequence orthology based approach for improved taxonomic estimation of metagenomic sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

MEGAN analysis of metagenomic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

Average genome size: a potential source of bias in comparative metagenomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

An obesity-associated gut microbiome with increased capacity for energy harvest

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

Matching phylogeny and metabolism in the uncultured marine bacteria, one cell at a time

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

Mapping short DNA sequencing reads and calling variants using mapping quality scores

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

The Genomes On Line Database (GOLD) in 2009: status of genomic and metagenomic projects and their associated metadata

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

A core gut microbiome in obese and lean twins

21 January 2018

1 reference

https://api.crossref.org/works/10.1371%2FJOURNAL.PONE.0027992

10.1371/JOURNAL.PONE.0027992

21 January 2018

Identifiers

DOI

1 reference

release_3zg5qi2crzcsbpk43ng4zjs5lq

13 September 2017

0 references

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3zg5qi2crzcsbpk43ng4zjs5lq

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

13 September 2017

PubMed publication ID

22162995

1 reference