Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome (Q33406826)

26 July 2017

title

Prokaryotic genomes and diversity in surface ocean waters: interrogating the global ocean sampling metagenome (English)

1 reference

26 July 2017

Erin J Biers

1 reference

26 July 2017

Shulei Sun

series ordinal

1 reference

26 July 2017

Erinn C Howard

series ordinal

1 reference

26 July 2017

language of work or name

English

0 references

publication date

6 February 2009

1 reference

Applied and Environmental Microbiology

26 July 2017

published in

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26 July 2017

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26 July 2017

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26 July 2017

page(s)

2221-2229

1 reference

It's all relative: ranking the diversity of aquatic bacterial communities

26 July 2017

cites work

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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21 June 2018

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Assessing diversity and biogeography of aerobic anoxygenic phototrophic bacteria in surface waters of the Atlantic and Pacific Oceans using the Global Ocean Sampling expedition metagenomes

21 June 2018

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21 June 2018

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21 June 2018

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Structural and functional diversity of the microbial kinome

21 June 2018

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21 June 2018

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21 June 2018

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Bacterial taxa that limit sulfur flux from the ocean.

21 June 2018

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21 June 2018

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21 June 2018

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Community genomics among stratified microbial assemblages in the ocean's interior

21 June 2018

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Molecular diversity and ecology of microbial plankton

21 June 2018

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Genome Streamlining in a Cosmopolitan Oceanic Bacterium

21 June 2018

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Microbial community genomics in the ocean

21 June 2018

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Comparative metagenomics of microbial communities

21 June 2018

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Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness

21 June 2018

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Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment

21 June 2018

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Reverse methanogenesis: testing the hypothesis with environmental genomics

21 June 2018

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Different SAR86 subgroups harbour divergent proteorhodopsins

21 June 2018

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Fine-scale phylogenetic architecture of a complex bacterial community.

21 June 2018

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Environmental genome shotgun sequencing of the Sargasso Sea

21 June 2018

1 reference

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Genome divergence in two Prochlorococcus ecotypes reflects oceanic niche differentiation

21 June 2018

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Genome sequence of the cyanobacterium Prochlorococcus marinus SS120, a nearly minimal oxyphototrophic genome

21 June 2018

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Counting the uncountable: statistical approaches to estimating microbial diversity

21 June 2018

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Quantitative comparisons of 16S rRNA gene sequence libraries from environmental samples

21 June 2018

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Construction and analysis of bacterial artificial chromosome libraries from a marine microbial assemblage

21 June 2018

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21 June 2018

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Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

21 June 2018

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rRNA operon copy number reflects ecological strategies of bacteria

21 June 2018

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The domain-specific probe EUB338 is insufficient for the detection of all Bacteria: development and evaluation of a more comprehensive probe set.

21 June 2018

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Physiology and molecular phylogeny of coexisting Prochlorococcus ecotypes

21 June 2018

1 reference

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Determination of microbial diversity in environmental samples: pitfalls of PCR-based rRNA analysis

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Diversity and depth-specific distribution of SAR11 cluster rRNA genes from marine planktonic bacteria

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Identification of common molecular subsequences

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Organization of the bacterial chromosome

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Bacterial carbon processing by generalist species in the coastal ocean.

21 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Prediction of effective genome size in metagenomic samples

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

A small and compact genome in the marine cyanobacterium Prochlorococcus marinus CCMP 1375: lack of an intron in the gene for tRNA(Leu)(UAA) and a single copy of the rRNA operon

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Genome Update: AT content in sequenced prokaryotic genomes

31 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2663191

Average gene length is highly conserved in prokaryotes and eukaryotes and diverges only between the two kingdoms

31 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19201952

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1128/AEM.02118-08

1 reference

26 July 2017

1 reference

26 July 2017

1 reference