Data-driven docking for the study of biomolecular complexes (Q30980755)

27 June 2017

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title

Data-driven docking for the study of biomolecular complexes (English)

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27 June 2017

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27 June 2017

Alexandre M J J Bonvin

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27 June 2017

Aalt D J van Dijk

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27 June 2017

language of work or name

English

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publication date

1 January 2005

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27 June 2017

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27 June 2017

volume

272

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27 June 2017

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27 June 2017

page(s)

293-312

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Structural basis of macromolecular recognition

27 June 2017

cites work

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Surface plasmon resonance: towards an understanding of the mechanisms of biological molecular recognition

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Reverse two-hybrid and one-hybrid systems to detect dissociation of protein-protein and DNA-protein interactions

21 January 2018

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Exploring protein-protein interactions with phage display

21 January 2018

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A hot spot of binding energy in a hormone-receptor interface

21 January 2018

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Unraveling hot spots in binding interfaces: progress and challenges

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ASEdb: a database of alanine mutations and their effects on the free energy of binding in protein interactions

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Protein-nucleic acid interactions and the expanding role of mass spectrometry

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Dynamic protein complexes: insights from mass spectrometry.

21 January 2018

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High-sensitivity mass spectrometry for imaging subunit interactions: hydrogen/deuterium exchange

21 January 2018

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Hydrogen/deuterium exchange mass spectrometry for investigating protein-ligand interactions.

21 January 2018

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Chemical cross-linking and mass spectrometry for protein structural modeling.

21 January 2018

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Mapping protein-protein interactions in solution by NMR spectroscopy

21 January 2018

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Weak alignment offers new NMR opportunities to study protein structure and dynamics.

21 January 2018

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Breaking symmetry in the structure determination of (large) symmetric protein dimers.

21 January 2018

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Improving the accuracy of NMR structures of large proteins using pseudocontact shifts as long-range restraints.

21 January 2018

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Global orientation of bound MMP-3 and N-TIMP-1 in solution via residual dipolar couplings

21 January 2018

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Modelling protein docking using shape complementarity, electrostatics and biochemical information

21 January 2018

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Protein docking for low-resolution structures.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Hydrogen bonding and molecular surface shape complementarity as a basis for protein docking.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Weighted geometric docking: incorporating external information in the rotation-translation scan

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

ZDOCK: an initial-stage protein-docking algorithm.

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Monte Carlo docking of protein-DNA complexes: incorporation of DNA flexibility and experimental data

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

ICM?A new method for protein modeling and design: Applications to docking and structure prediction from the distorted native conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Empirical force fields for biological macromolecules: overview and issues.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Solution structure and DNA-binding properties of the C-terminal domain of UvrC from E.coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Biophysical characterization of the complex between double-stranded RNA and the N-terminal domain of the NS1 protein from influenza A virus: evidence for a novel RNA-binding mode

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Mapping of a protein-RNA kissing hairpin interface: Rom and Tar-Tar*

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Evolutionarily conserved Galphabetagamma binding surfaces support a model of the G protein-receptor complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Phage-display and correlated mutations identify an essential region of subdomain 1C involved in homodimerization of Escherichia coli FtsA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Computational searching and mutagenesis suggest a structure for the pentameric transmembrane domain of phospholamban

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Dimerization of the transmembrane domain of Integrin alphaIIb subunit in cell membranes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

The crystal structure of the globular head of complement protein C1q provides a basis for its versatile recognition properties

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Identification of the protein kinase A regulatory R I α-catalytic subunit interface by amide H/ 2 H exchange and protein docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Model of the ran-RCC1 interaction using biochemical and docking experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Filtering and selection of structural models: combining docking and NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Electron transfer complexes of cytochrome c peroxidase from Paracoccus denitrificans containing more than one cytochrome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A novel approach for assessing macromolecular complexes combining soft-docking calculations with NMR data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Heteronuclear NMR and soft docking: an experimental approach for a structural model of the cytochrome c553-ferredoxin complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

An NMR-based model of the ubiquitin-bound human ubiquitin conjugation complex Mms2.Ubc13. The structural basis for lysine 63 chain catalysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Orientational sampling and rigid-body minimization in molecular docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Mapping the heparin-binding site on the 13-14F3 fragment of fibronectin.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Computational simulations of interactions of scorpion toxins with the voltage-gated potassium ion channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Automated prediction of 15N, 13Calpha, 13Cbeta and 13C' chemical shifts in proteins using a density functional database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Rapid and accurate calculation of protein 1H, 13C and 15N chemical shifts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Convergent recognition of the IgE binding site on the high-affinity IgE receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Taking geometry to its edge: fast unbound rigid (and hinge-bent) docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Prediction of the structure of the complex between the 30S ribosomal subunit and colicin E3 via weighted-geometric docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

On the interaction of colicin E3 with the ribosome.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure and DNA-binding properties of the cytolysin regulator CylR2 from Enterococcus faecalis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of the BgK-Kv1.1 complex based on distance restraints identified by double mutant cycles. Molecular basis for convergent evolution of Kv1 channel blockers

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Modeling the structure of agitoxin in complex with the Shaker K+ channel: a computational approach based on experimental distance restraints extracted from thermodynamic mutant cycles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Experimentally based model of a complex between a snake toxin and the alpha 7 nicotinic receptor

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of the interferon-receptor complex determined by distance constraints from double-mutant cycles and flexible docking

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A structural model of EmrE, a multi-drug transporter from Escherichia coli

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

The structure of the complex of plastocyanin and cytochrome f, determined by paramagnetic NMR and restrained rigid-body molecular dynamics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Hydrophobic interactions in a cyanobacterial plastocyanin-cytochrome f complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Model building of a protein-protein complexed structure using saturation transfer and residual dipolar coupling without paired intermolecular NOE.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Refined Structure, DNA Binding Studies, and Dynamics of the Bacteriophage Pf3 Encoded Single-Stranded DNA Binding Protein,

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Docking of protein-protein complexes on the basis of highly ambiguous intermolecular distance restraints derived from 1H/15N chemical shift mapping and backbone 15N-1H residual dipolar couplings using conjoined rigid body/torsion angle dynamics.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Mapping the topology and determination of a low-resolution three-dimensional structure of the calmodulin-melittin complex by chemical cross-linking and high-resolution FTICRMS: direct demonstration of multiple binding modes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Ambiguous NOEs and automated NOE assignment

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A calculation strategy for the structure determination of symmetric dimers by 1H NMR.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis, and docking approaches.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

NMR solution structure of the focal adhesion targeting domain of focal adhesion kinase in complex with a paxillin LD peptide: evidence for a two-site binding model

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A classic zinc finger from friend of GATA mediates an interaction with the coiled-coil of transforming acidic coiled-coil 3

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Rapid analysis of large protein-protein complexes using NMR-derived orientational constraints: the 95 kDa complex of LpxA with acyl carrier protein.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A docking approach to the study of copper trafficking proteins; interaction between metallochaperones and soluble domains of copper ATPases.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Specificity of the interaction between ubiquitin-associated domains and ubiquitin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Physical interaction between replication protein A and Rad51 promotes exchange on single-stranded DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Insight into molecular interactions between two PB1 domains.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure, dynamics and interactions of p47, a major adaptor of the AAA ATPase, p97.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Prediction of protein interaction sites from sequence profile and residue neighbor list

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Evolutionary predictions of binding surfaces and interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Prediction of protein--protein interaction sites in heterocomplexes with neural networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Automated structure-based prediction of functional sites in proteins: applications to assessing the validity of inheriting protein function from homology in genome annotation and to protein docking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Three-dimensional cluster analysis identifies interfaces and functional residue clusters in proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

ConSurf: an algorithmic tool for the identification of functional regions in proteins by surface mapping of phylogenetic information

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

An evolutionary trace method defines binding surfaces common to protein families

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

ProMate: a structure based prediction program to identify the location of protein-protein binding sites

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Evolutionary epitopes of Hsp90 and p23: implications for their interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

PathBLAST: a tool for alignment of protein interaction networks

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Assessment of progress over the CASP experiments

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Probing the dimeric structure of porcine aminoacylase 1 by mass spectrometric and modeling procedures.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

MULTIPROSPECTOR: an algorithm for the prediction of protein-protein interactions by multimeric threading

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Multimeric threading-based prediction of protein-protein interactions on a genomic scale: application to the Saccharomyces cerevisiae proteome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure-based assembly of protein complexes in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of the 80S ribosome from Saccharomyces cerevisiae--tRNA-ribosome and subunit-subunit interactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Low-Resolution Structure of the Proteolytic Fragments of the Rapana venosa Hemocyanin in Solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Molecular shapes of transcription factors TFIIB and VP16 in solution: implications for recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A model of the quaternary structure of the Escherichia coli F1 ATPase from X-ray solution scattering and evidence for structural changes in the delta subunit during ATP hydrolysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Quaternary structure and catalytic activity of the Escherichia coli ribonuclease E amino-terminal catalytic domain.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Conformation of full-length Bruton tyrosine kinase (Btk) from synchrotron X-ray solution scattering.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural basis for the co-activation of protein kinase B by T-cell leukemia-1 (TCL1) family proto-oncoproteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Biological role and structural mechanism of twinfilin-capping protein interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Insights into signal transduction revealed by the low resolution structure of the FixJ response regulator

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Preferential substrate binding orientation by the molecular chaperone HscA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Clustering of class I HLA oligomers with CD8 and TCR: three-dimensional models based on fluorescence resonance energy transfer and crystallographic data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Recent advances in FRET: distance determination in protein-DNA complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Use of a new label, (13)==(18)O, in the determination of a structural model of phospholamban in a lipid bilayer. Spatial restraints resolve the ambiguity arising from interpretations of mutagenesis data.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Experimentally based orientational refinement of membrane protein models: A structure for the Influenza A M2 H+ channel

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural Reorganization of Proteins Revealed by Radiolysis and Mass Spectrometry: G-Actin Solution Structure Is Divalent Cation Dependent

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Synchrotron radiolysis and mass spectrometry: a new approach to research on the actin cytoskeleton.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure prediction of protein complexes by an NMR-based protein docking algorithm.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

SOS-NMR: a saturation transfer NMR-based method for determining the structures of protein-ligand complexes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A combinatorial selective labeling method for the assignment of backbone amide NMR resonances

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Rapid protein-ligand docking using soft modes from molecular dynamics simulations to account for protein deformability: binding of FK506 to FKBP.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Predictions of protein flexibility: first-order measures

21 January 2018

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https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

High throughput protein fold identification by using experimental constraints derived from intramolecular cross-links and mass spectrometry.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

An approach to membrane protein structure without crystals.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Exploring the conformational space of membrane protein folds matching distance constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Optimal bundling of transmembrane helices using sparse distance constraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

How do helix-helix interactions help determine the folds of membrane proteins? Perspectives from the study of homo-oligomeric helical bundles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Mining biochemical information: lessons taught by the ribosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Assembly of the Drosophila 26 S proteasome is accompanied by extensive subunit rearrangements

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Protein structure prediction via combinatorial assembly of sub-structural units.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Interfacial membrane docking of cytosolic phospholipase A2 C2 domain using electrostatic potential-modulated spin relaxation magnetic resonance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Docking phospholipase A2 on membranes using electrostatic potential-modulated spin relaxation magnetic resonance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

C2 domain of protein kinase C alpha: elucidation of the membrane docking surface by site-directed fluorescence and spin labeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Multivalent mechanism of membrane insertion by the FYVE domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Coupling of folding and binding of thymosin beta4 upon interaction with monomeric actin monitored by nuclear magnetic resonance

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

The tissue factor/factor VIIa/factor Xa complex: a model built by docking and site-directed mutagenesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Characterization of the stromal cell-derived factor-1alpha-heparin complex

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Cysteine reactivity and oligomeric structures of phospholamban and its mutants.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Using experimental information to produce a model of the transmembrane domain of the ion channel phospholamban

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Guiding a docking mode by phage display: selection of correlated mutations at the staphylokinase-plasmin interface

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Receptor and betagamma binding sites in the alpha subunit of the retinal G protein transducin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Experimentally biased model structure of the Hsc70/auxilin complex: substrate transfer and interdomain structural change

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Biochemical filtering of a protein-protein docking simulation identifies the structure of a complex between a recombinant antibody fragment and alpha-bungarotoxin

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural model of a malonyl-CoA-binding site of carnitine octanoyltransferase and carnitine palmitoyltransferase I: mutational analysis of a malonyl-CoA affinity domain

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of the LexA repressor-DNA complex probed by affinity cleavage and affinity photo-cross-linking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Modelling repressor proteins docking to DNA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Modeling helix-turn-helix protein-induced DNA bending with knowledge-based distance restraints

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Probing catalytically essential domain orientation in histidine kinase EnvZ by targeted disulfide crosslinking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of the subunit c oligomer in the F1Fo ATP synthase: model derived from solution structure of the monomer and cross-linking in the native enzyme

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure and assembly of the catalytic region of human complement protease C1r: a three-dimensional model based on chemical cross-linking and homology modeling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

DNA-repair protein hHR23a alters its protein structure upon binding proteasomal subunit S5a

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural properties of polyubiquitin chains in solution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Solution conformation of Lys63-linked di-ubiquitin chain provides clues to functional diversity of polyubiquitin signaling

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Molecular dissection of the interaction between the small G proteins Rac1 and RhoA and protein kinase C-related kinase 1 (PRK1)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

The structure of the IgE Cepsilon2 domain and its role in stabilizing the complex with its high-affinity receptor FcepsilonRIalpha

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Saturation transfer difference 1D-TOCSY experiments to map the topography of oligosaccharides recognized by a monoclonal antibody directed against the cell-wall polysaccharide of group A streptococcus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

NMR-based determination of the binding epitope and conformational analysis of MUC-1 glycopeptides and peptides bound to the breast cancer-selective monoclonal antibody SM3.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

DNA-XPA interactions: a (31)P NMR and molecular modeling study of dCCAATAACC association with the minimal DNA-binding domain (M98-F219) of the nucleotide excision repair protein XPA.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Energetics of protein-protein interactions: analysis of the barnase-barstar interface by single mutations and double mutant cycles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Analysis of binding interactions in an idiotope-antiidiotope protein-protein complex by double mutant cycles

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Interactions between yeast iso-1-cytochrome c and its peroxidase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Double mutant studies identify electrostatic interactions that are important for docking cytochrome c2 onto the bacterial reaction center

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Protein microarray technology and ultraviolet crosslinking combined with mass spectrometry for the analysis of protein-DNA interactions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Long-range changes in a protein antigen due to antigen-antibody interaction

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

NMR chemical shift mapping of the binding site of a protein proteinase inhibitor: changes in the (1)H, (13)C and (15)N NMR chemical shifts of turkey ovomucoid third domain upon binding to bovine chymotrypsin A(alpha).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structural characterization of the RNase E S1 domain and identification of its oligonucleotide-binding and dimerization interfaces

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

MOLSCRIPT: a program to produce both detailed and schematic plots of protein structures

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Raster3D Version 2.0. A program for photorealistic molecular graphics

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Structure of a flavivirus envelope glycoprotein in its low-pH-induced membrane fusion conformation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Principles of docking: An overview of search algorithms and a guide to scoring functions

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Ubiquitin Binding Interface Mapping on Yeast Ubiquitin Hydrolase by NMR Chemical Shift Perturbation†

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Myoglobin and Cytochromeb5: A Nuclear Magnetic Resonance Study of a Highly Dynamic Protein Complex†

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

A Structural Model of the Catalytic Subunit-regulatory Subunit Dimeric Complex of the cAMP-dependent Protein Kinase

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Characterization of an Antagonist Interleukin-6 Dimer by Stable Isotope Labeling, Cross-linking, and Mass Spectrometry

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

Molecular basis of antigen mimicry by an anti-idiotope

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1742-4658.2004.04473.X

10.1111/J.1742-4658.2004.04473.X

21 January 2018

Identifiers

DOI

1 reference

27 June 2017

1 reference