Computational deconvolution of genome wide expression data from Parkinson's and Huntington's disease brain tissues using population-specific expression analysis (Q30885974)

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English	Computational deconvolution of genome wide expression data from Parkinson's and Huntington's disease brain tissues using population-specific expression analysis	scientific article

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Europe PubMed Central

PMC publication ID

13 November 2017

Computational deconvolution of genome wide expression data from Parkinson's and Huntington's disease brain tissues using population-specific expression analysis (English)

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Europe PubMed Central

PMC publication ID

13 November 2017

Parkinson's disease

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inferred from title

Huntington's disease

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1 reference

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inferred from title

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Ruth Luthi-Carter

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Ruth Luthi-Carter

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Europe PubMed Central

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13 November 2017

author name string

Alberto Capurro

1

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Europe PubMed Central

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13 November 2017

Liviu-Gabriel Bodea

2

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Europe PubMed Central

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13 November 2017

Patrick Schaefer

3

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Europe PubMed Central

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13 November 2017

Victoria M Perreau

5

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Europe PubMed Central

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13 November 2017

publication date

1 January 2014

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Europe PubMed Central

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13 November 2017

Frontiers in Neuroscience

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Europe PubMed Central

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13 November 2017

8

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Europe PubMed Central

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13 November 2017

441

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Europe PubMed Central

PMC publication ID

13 November 2017

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Cytoscape

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Europe PubMed Central

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https://europepmc.org/search?query=(METHODS:'Cytoscape')

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

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limma

Limma

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Europe PubMed Central

22 June 2022

https://europepmc.org/article/PMC/4288238

based on heuristic

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CZ Software Mentions: A large dataset of software mentions in the biomedical literature

SCAMP5 plays a critical role in synaptic vesicle endocytosis during high neuronal activity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Defective autophagy in Parkinson's disease: lessons from genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Common genetic variants and gene expression associated with white matter microstructure in the human brain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Parkin and PINK1: much more than mitophagy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

BEX1 promotes imatinib-induced apoptosis by binding to and antagonizing BCL-2

1 reference

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21 June 2018

Syntaxin 1B, but not syntaxin 1A, is necessary for the regulation of synaptic vesicle exocytosis and of the readily releasable pool at central synapses

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

SIRT1 in neurodevelopment and brain senescence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

CaMKII: a molecular substrate for synaptic plasticity and memory.

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21 June 2018

Meta-analysis of gene coexpression networks in the post-mortem prefrontal cortex of patients with schizophrenia and unaffected controls

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21 June 2018

Specific distribution of the autophagic protein GABARAPL1/GEC1 in the developing and adult mouse brain and identification of neuronal populations expressing GABARAPL1/GEC1.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Connections between SNAREs and autophagy

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Mitochondria targeted therapeutic approaches in Parkinson's and Huntington's diseases

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

NCBI GEO: archive for functional genomics data sets--update

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21 June 2018

The neuroendocrine protein 7B2 suppresses the aggregation of neurodegenerative disease-related proteins

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21 June 2018

Genenames.org: the HGNC resources in 2013

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21 June 2018

Supportive evidence for 11 loci from genome-wide association studies in Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Cell population-specific expression analysis of human cerebellum

1 reference

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21 June 2018

ADAM23 knockdown promotes neuronal differentiation of P19 embryonal carcinoma cells by up-regulating P27KIP1 expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Parkinsonism due to mutations in PINK1, parkin, and DJ-1 and oxidative stress and mitochondrial pathways

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21 June 2018

Mitophagy and Parkinson's disease: be eaten to stay healthy

1 reference

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21 June 2018

Parkinson's disease and parkinsonism: neuropathology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Genetics of Parkinson disease and other movement disorders

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

DCLK1 variants are associated across schizophrenia and attention deficit/hyperactivity disorder

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

The role of autophagy in Parkinson's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Genome-wide association study identifies candidate genes for Parkinson's disease in an Ashkenazi Jewish population

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Resveratrol-activated AMPK/SIRT1/autophagy in cellular models of Parkinson's disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Expression analysis of dopaminergic neurons in Parkinson's disease and aging links transcriptional dysregulation of energy metabolism to cell death.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Huntington's disease - neuropathology

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Gene expression profiling of R6/2 transgenic mice with different CAG repeat lengths reveals genes associated with disease onset and progression in Huntington's disease

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Cytoscape 2.8: new features for data integration and network visualization

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21 June 2018

ExprEssence--revealing the essence of differential experimental data in the context of an interaction/regulation net-work

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21 June 2018

PGC-1α, a potential therapeutic target for early intervention in Parkinson's disease

1 reference

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21 June 2018

Mechanisms underlying inflammation in neurodegeneration

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

The doublecortin gene family and disorders of neuronal structure.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Evidence for gender-specific transcriptional profiles of nigral dopamine neurons in Parkinson disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

SCAMP5, NBEA and AMISYN: three candidate genes for autism involved in secretion of large dense-core vesicles.

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21 June 2018

Mitochondrial kinases in Parkinson's disease: converging insights from neurotoxin and genetic models

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21 June 2018

Mitochondrial dynamics in Parkinson's disease

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21 June 2018

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21 June 2018

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21 June 2018

Parkin is recruited selectively to impaired mitochondria and promotes their autophagy

1 reference

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21 June 2018

Application of a translational profiling approach for the comparative analysis of CNS cell types

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21 June 2018

Mechanisms of neurodegeneration in Huntington's disease.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

21 June 2018

Oxygen-regulated isoforms of cytochrome c oxidase have differential effects on its nitric oxide production and on hypoxic signaling

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21 June 2018

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function

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21 June 2018

Mitochondria in the aetiology and pathogenesis of Parkinson's disease

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21 June 2018

Microglia-mediated neurotoxicity: uncovering the molecular mechanisms

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21 June 2018

Microtubule: a common target for parkin and Parkinson's disease toxins

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21 June 2018

Bex1, a novel interactor of the p75 neurotrophin receptor, links neurotrophin signaling to the cell cycle

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21 June 2018

Regional and cellular gene expression changes in human Huntington's disease brain

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21 June 2018

BioGRID: a general repository for interaction datasets

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21 June 2018

Bioconductor: open software development for computational biology and bioinformatics

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21 June 2018

affy--analysis of Affymetrix GeneChip data at the probe level

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21 June 2018

Parkinson's disease: mechanisms and models

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21 June 2018

DCAMKL1, a brain-specific transmembrane protein on 13q12.3 that is similar to doublecortin (DCX)

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21 June 2018

A novel gene containing a trinucleotide repeat that is expanded and unstable on Huntington's disease chromosomes.

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21 June 2018

The synaptic vesicle cycle: a cascade of protein-protein interactions

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21 June 2018

The functional anatomy of basal ganglia disorders

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21 June 2018

A new look at the statistical model identification

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21 January 2018

GABARAPL1 (GEC1) associates with autophagic vesicles

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21 January 2018

ADAM23 is a cell-surface glycoprotein expressed by central nervous system neurons.

1 reference

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21 January 2018

Proteomic identification of a stress protein, mortalin/mthsp70/GRP75: relevance to Parkinson disease.

1 reference

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21 January 2018

Bex1 is involved in the regeneration of axons after injury.

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21 January 2018

Population-specific expression analysis (PSEA) reveals molecular changes in diseased brain

1 reference

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21 January 2018

Progressive abnormalities in skeletal muscle and neuromuscular junctions of transgenic mice expressing the Huntington's disease mutation

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21 January 2018

Inducers of chemical hypoxia act in a gender- and brain region-specific manner on primary astrocyte viability and cytochrome C oxidase.

1 reference

https://api.crossref.org/works/10.3389%2FFNINS.2014.00441

21 January 2018

Thy28 partially prevents apoptosis induction following engagement of membrane immunoglobulin in WEHI-231 B lymphoma cells.

1 reference

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21 January 2018

Transcriptional analysis of multiple brain regions in Parkinson's disease supports the involvement of specific protein processing, energy metabolism, and signaling pathways, and suggests novel disease mechanisms

1 reference

https://api.crossref.org/works/10.3389%2FFNINS.2014.00441

21 January 2018

Identifying candidate genes for Parkinson's disease by integrative genomics method.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4288238

25 November 2018

Identifiers

10.3389/FNINS.2014.00441

1 reference

Europe PubMed Central

PMC publication ID

13 November 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 November 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

13 November 2017

ResearchGate publication ID

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