A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function (Q29547320)

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English	A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function	scientific article (publication date: 2 January 2008)

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title

A transcriptome database for astrocytes, neurons, and oligodendrocytes: a new resource for understanding brain development and function (English)

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main subject

database

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transcriptome

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astrocyte

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oligodendrocyte

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based on heuristic

inferred from title

neuron

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brain development

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Aldh1l1

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author

Ben Emery

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2

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Europe PubMed Central

PMC publication ID

6671143

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Ben Barres

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12

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Ben A Barres

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6671143

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author name string

John D Cahoy

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1

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6671143

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Amit Kaushal

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3

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6671143

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Lynette C Foo

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6671143

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Jennifer L Zamanian

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5

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6671143

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Karen S Christopherson

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6

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Yi Xing

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Jane L Lubischer

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8

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Paul A Krieg

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9

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6671143

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Sergey A Krupenko

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10

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6671143

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Wesley J Thompson

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11

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language of work or name

English

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publication date

2 January 2008

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published in

Journal of Neuroscience

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23 April 2017

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Europe PubMed Central

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6671143

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volume

28

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stated in

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6671143

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issue

1

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23 April 2017

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Europe PubMed Central

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6671143

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page(s)

264-278

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describes a project that uses

Affymetrix GeneChip Mouse Genome 430 2.0 arrays

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cites work

Subventricular zone astrocytes are neural stem cells in the adult mammalian brain

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inferred from PubMed ID database lookup

Loss of expression of the DRR 1 gene at chromosomal segment 3p21.1 in renal cell carcinoma

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Nephroblastoma overexpressed gene (NOV) codes for a growth factor that induces protein tyrosine phosphorylation

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A family of human RNA-binding proteins related to the Drosophila Bruno translational regulator

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12 December 2020

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The topographical distribution of S-100 and GFA proteins in the adult rat brain: An immunohistochemical study using horseradish peroxidase-labelled antibodies

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12 December 2020

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The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing

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12 December 2020

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Notch1 and Notch3 instructively restrict bFGF-responsive multipotent neural progenitor cells to an astroglial fate

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12 December 2020

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Phosphatidylserine-dependent phagocytosis of apoptotic glioma cells by normal human microglia, astrocytes, and glioma cells

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Significance analysis of microarrays applied to the ionizing radiation response

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12 December 2020

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Model-based analysis of oligonucleotide arrays: model validation, design issues and standard error application

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12 December 2020

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Protoplasmic astrocytes in CA1 stratum radiatum occupy separate anatomical domains

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12 December 2020

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Mertk triggers uptake of photoreceptor outer segments during phagocytosis by cultured retinal pigment epithelial cells

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12 December 2020

based on heuristic

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Gli and hedgehog in cancer: tumours, embryos and stem cells.

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12 December 2020

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10-formyltetrahydrofolate dehydrogenase, one of the major folate enzymes, is down-regulated in tumor tissues and possesses suppressor effects on cancer cells.

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

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"Stemness": transcriptional profiling of embryonic and adult stem cells

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12 December 2020

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An RCS-like retinal dystrophy phenotype in mer knockout mice

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12 December 2020

based on heuristic

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Adult mouse astrocytes degrade amyloid-beta in vitro and in situ

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12 December 2020

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Unwrapping glial biology: Gcm target genes regulating glial development, diversification, and function

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12 December 2020

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Genotypic association of exonic LGI4 polymorphisms and childhood absence epilepsy

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12 December 2020

based on heuristic

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Murine bubblegum orthologue is a microsomal very long-chain acyl-CoA synthetase

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12 December 2020

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FGF2-induced chromatin remodeling regulates CNTF-mediated gene expression and astrocyte differentiation

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12 December 2020

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Maturation of astrocyte morphology and the establishment of astrocyte domains during postnatal hippocampal development.

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12 December 2020

based on heuristic

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Gene expression nervous system atlas (GENSAT).

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12 December 2020

based on heuristic

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Intercellular metabolic compartmentation in the brain: past, present and future

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular diversity of astrocytes with implications for neurological disorders

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12 December 2020

based on heuristic

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Bioconductor: open software development for computational biology and bioinformatics

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

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The genetics of hiding the corpse: engulfment and degradation of apoptotic cells in C. elegans and D. melanogaster.

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12 December 2020

based on heuristic

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Axon branch removal at developing synapses by axosome shedding

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Fluorescent proteins expressed in mouse transgenic lines mark subsets of glia, neurons, macrophages, and dendritic cells for vital examination.

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Sonic hedgehog controls stem cell behavior in the postnatal and adult brain

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12 December 2020

based on heuristic

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Neuronal subtype-specific genes that control corticospinal motor neuron development in vivo

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12 December 2020

based on heuristic

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Thrombospondins are astrocyte-secreted proteins that promote CNS synaptogenesis

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MLC1: a novel protein in distal astroglial processes

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Cortical malformation and pediatric epilepsy: a molecular genetic approach

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PubMed

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A genome-wide in situ hybridization map of RNA-binding proteins reveals anatomically restricted expression in the developing mouse brain

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Maternal embryonic leucine zipper kinase (MELK) regulates multipotent neural progenitor proliferation

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The neuronal PAS domain protein 3 transcription factor controls FGF-mediated adult hippocampal neurogenesis in mice

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12 December 2020

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Cell death and control of cell survival in the oligodendrocyte lineage

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Specification of astrocytes by bHLH protein SCL in a restricted region of the neural tube

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Molecular taxonomy of major neuronal classes in the adult mouse forebrain

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

From genomics to chemical genomics: new developments in KEGG

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https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

FACS-array profiling of striatal projection neuron subtypes in juvenile and adult mouse brains

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The epilepsy-linked Lgi1 protein assembles into presynaptic Kv1 channels and inhibits inactivation by Kvbeta1

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Neuron-glia metabolic coupling and plasticity

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential role of the apoptotic cell engulfment genes draper and ced-6 in programmed axon pruning during Drosophila metamorphosis.

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The Drosophila cell corpse engulfment receptor Draper mediates glial clearance of severed axons

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Discoidin domain receptor 1 receptor tyrosine kinase induces cyclooxygenase-2 and promotes chemoresistance through nuclear factor-kappaB pathway activation

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identification of a novel oligodendrocyte cell adhesion protein using gene expression profiling

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stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Functional genomic analysis of oligodendrocyte differentiation.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The folate metabolic enzyme ALDH1L1 is restricted to the midline of the early CNS, suggesting a role in human neural tube defects.

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Genome-wide atlas of gene expression in the adult mouse brain

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Probe selection and expression index computation of Affymetrix Exon Arrays

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Human DNA replication-related element binding factor (hDREF) self-association via hATC domain is necessary for its nuclear accumulation and DNA binding

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PubMed

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https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

MerTK activation during RPE phagocytosis in vivo requires alphaVbeta5 integrin

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence of a role for lactadherin in Alzheimer's disease

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Engulfment is required for cell competition

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Essential role for MFG-E8 as ligand for alphavbeta5 integrin in diurnal retinal phagocytosis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Disease gene candidates revealed by expression profiling of retinal ganglion cell development

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and characterization of cDNA clones for rat liver 10-formyltetrahydrofolate dehydrogenase

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Preparation of separate astroglial and oligodendroglial cell cultures from rat cerebral tissue

1 reference

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reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Histochemical evidence for a post-lesion reorganization of cholinergic afferents in the hippocampal formation of the mature cat

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evidence for large-scale astrocyte death in the developing cerebellum

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Gene dose of apolipoprotein E type 4 allele and the risk of Alzheimer's disease in late onset families

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Myelin/oligodendrocyte glycoprotein (MOG) expression is associated with myelin deposition

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Spinal cord oligodendrocytes develop from ventrally derived progenitor cells that express PDGF alpha-receptors

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Glucocorticoid regulation of in vitro astrocyte phagocytosis

1 reference

stated in

PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Folate and 10-formyltetrahydrofolate dehydrogenase (FDH) expression in the central nervous system of the mature rat

1 reference

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PubMed

reference URL

https://pubmed.ncbi.nlm.nih.gov/18171944

retrieved

12 December 2020

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Identifiers

DOI

10.1523/JNEUROSCI.4178-07.2008

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=18171944

retrieved

23 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

180929

stated in

Europe PubMed Central

PMC publication ID

6671143

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6671143&resulttype=core&format=json

retrieved

16 May 2020

OpenCitations bibliographic resource ID

180929

1 reference

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

180929

PMC publication ID

6671143

1 reference

stated in

Europe PubMed Central

PMC publication ID

6671143

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6671143&resulttype=core&format=json

retrieved

16 May 2020

PubMed publication ID

18171944

3 references

stated in

PubMed

reference URL

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=18171944

retrieved

23 April 2017

stated in

Consolidated OpenCitations Corpus – April 2017

OpenCitations bibliographic resource ID

180929

stated in

Europe PubMed Central

PMC publication ID

6671143

reference URL

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6671143&resulttype=core&format=json

retrieved

16 May 2020

ResearchGate publication ID

5677751

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