Data management challenges in three-dimensional EM. (Q30580181)

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19 February 2020

title

Data management challenges in three-dimensional EM (English)

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

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19 February 2020

Steven J Ludtke

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19 February 2020

José-Maria Carazo

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19 February 2020

Emma Hill

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19 February 2020

Grant J Jensen

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19 February 2020

David Mastronarde

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19 February 2020

William J Moore

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19 February 2020

Alan Roseman

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19 February 2020

Peter Rosenthal

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19 February 2020

Carlos-Oscar S Sorzano

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19 February 2020

Martyn Winn

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19 February 2020

Richard Henderson

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publication date

1 December 2012

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Nature Structural & Molecular Biology

19 February 2020

published in

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volume

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issue

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19 February 2020

page(s)

1203-1207

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OMERO: flexible, model-driven data management for experimental biology

19 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Outcome of the first electron microscopy validation task force meeting

20 June 2018

1 reference

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Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Overview of the CCP4 suite and current developments

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Conformational rearrangement of gastric H(+),K(+)-ATPase induced by an acid suppressant

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

EMDataBank.org: unified data resource for CryoEM

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Structural characterization of proteins and complexes using small-angle X-ray solution scattering.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Metadata matters: access to image data in the real world

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Role of dimerization and substrate exclusion in the regulation of bone morphogenetic protein-1 and mammalian tolloid

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Appion: an integrated, database-driven pipeline to facilitate EM image processing

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Image processing for electron microscopy single-particle analysis using XMIPP.

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Bsoft: image processing and molecular modeling for electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

EMAN2: an extensible image processing suite for electron microscopy

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

The CCPN data model for NMR spectroscopy: development of a software pipeline

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

EMDep: a web-based system for the deposition and validation of high-resolution electron microscopy macromolecular structural information

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Announcing the worldwide Protein Data Bank

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy

20 June 2018

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

20 June 2018

https://pubmed.ncbi.nlm.nih.gov/23211764

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

New electron microscopy database and deposition system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

Computer visualization of three-dimensional image data using IMOD

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

MRC image processing programs

20 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4048199

PDBe: Protein Data Bank in Europe

20 June 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2426

Announcing the JCB DataViewer, a browser-based application for viewing original image files

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNSMB.2426

21 January 2018

Identifiers

DOI

10.1038/NSMB.2426

1 reference

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19 February 2020

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19 February 2020

PubMed publication ID

23211764

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