Appion: an integrated, database-driven pipeline to facilitate EM image processing (Q29614288)

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22 January 2020

title

Appion: an integrated, database-driven pipeline to facilitate EM image processing (English)

2 references

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30 April 2017

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22 January 2020

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22 January 2020

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22 January 2020

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22 January 2020

Scott M Stagg

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22 January 2020

Anchi Cheng

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22 January 2020

Denis Fellmann

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22 January 2020

James Pulokas

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22 January 2020

Craig Yoshioka

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22 January 2020

Christopher Irving

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22 January 2020

Anke Mulder

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22 January 2020

Pick-Wei Lau

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22 January 2020

Dmitry Lyumkis

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22 January 2020

Clinton S Potter

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language of work or name

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30 April 2017

publication date

1 April 2009

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Journal of Structural Biology

22 January 2020

published in

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22 January 2020

volume

166

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22 January 2020

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22 January 2020

page(s)

95-102

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30 April 2017

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3.88 Å structure of cytoplasmic polyhedrosis virus by cryo-electron microscopy

22 January 2020

cites work

1 reference

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Software tools for molecular microscopy

30 April 2017

1 reference

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Towards atomic resolution structural determination by single-particle cryo-electron microscopy

30 April 2017

1 reference

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De novo backbone trace of GroEL from single particle electron cryomicroscopy

30 April 2017

1 reference

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Backbone structure of the infectious epsilon15 virus capsid revealed by electron cryomicroscopy

30 April 2017

1 reference

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Ab initio resolution measurement for single particle structures

30 April 2017

1 reference

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Automated molecular microscopy: the new Leginon system

30 April 2017

1 reference

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EMAN: semiautomated software for high-resolution single-particle reconstructions

30 April 2017

1 reference

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Determination of the fold of the core protein of hepatitis B virus by electron cryomicroscopy

30 April 2017

1 reference

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SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields

30 April 2017

1 reference

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A new generation of the IMAGIC image processing system

30 April 2017

1 reference

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FREALIGN: high-resolution refinement of single particle structures

30 April 2017

1 reference

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JADAS: a customizable automated data acquisition system and its application to ice-embedded single particles

30 April 2017

1 reference

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Bacteriophage lambda stabilization by auxiliary protein gpD: timing, location, and mechanism of attachment determined by cryo-EM.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775544

Assembly architecture and DNA binding of the bacteriophage P22 terminase small subunit

3 June 2018

1 reference

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Image processing for electron microscopy single-particle analysis using XMIPP.

3 June 2018

1 reference

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A test-bed for optimizing high-resolution single particle reconstructions

3 June 2018

1 reference

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Near-atomic resolution using electron cryomicroscopy and single-particle reconstruction

3 June 2018

1 reference

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SPARX, a new environment for Cryo-EM image processing

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775544

Automated cryoEM data acquisition and analysis of 284742 particles of GroEL.

3 June 2018

1 reference

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Does contamination buildup limit throughput for automated cryoEM?

3 June 2018

1 reference

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ACE: automated CTF estimation

3 June 2018

1 reference

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The Escherichia coli large ribosomal subunit at 7.5 A resolution

3 June 2018

1 reference

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Visualization of a 4-helix bundle in the hepatitis B virus capsid by cryo-electron microscopy.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775544

Particle finding in electron micrographs using a fast local correlation algorithm.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775544

A relational database for cryoEM: experience at one year and 50 000 images

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2775544

10.1016/J.JSB.2009.01.002

26 November 2018

Identifiers

DOI

2 references

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22 January 2020

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3 references

30 April 2017

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22 January 2020

PubMed publication ID

3 references

30 April 2017

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