De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae). (Q30454503)

21 June 2017

title

De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae). (English)

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21 June 2017

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Silene vulgaris

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Caryophyllaceae

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Brian J Sanderson

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Andrea E Berardi

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Stephen R Keller

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21 June 2017

Douglas R Taylor

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21 June 2017

Daniel B Sloan

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21 June 2017

John F Karpovich

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21 June 2017

publication date

17 October 2011

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Molecular Ecology Resources

21 June 2017

published in

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21 June 2017

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21 June 2017

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21 June 2017

page(s)

333-343

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Comparative 454 pyrosequencing of transcripts from two olive genotypes during fruit development

21 June 2017

cites work

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

De novo transcriptome characterization and development of genomic tools for Scabiosa columbaria L. using next-generation sequencing techniques.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Transcriptomic signatures of ash (Fraxinus spp.) phloem

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comparison of the transcriptomes of American chestnut (Castanea dentata) and Chinese chestnut (Castanea mollissima) in response to the chestnut blight infection

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Variation in mutation rate and polymorphism among mitochondrial genes of Silene vulgaris

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Plant disease resistance protein signaling: NBS-LRR proteins and their partners

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Combining next-generation pyrosequencing with microarray for large scale expression analysis in non-model species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Paternal leakage and heteroplasmy of mitochondrial genomes in Silene vulgaris: evidence from experimental crosses

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Silene as a model system in ecology and evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Transcriptome characterization and high throughput SSRs and SNPs discovery in Cucurbita pepo (Cucurbitaceae)

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Molecular characterization and detection of Vicia cryptic virus in different Vicia faba cultivars

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

eFloras: New Directions for Online Floras Exemplified by the Flora of China Project

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Characterization of duplicate gene evolution in the recent natural allopolyploid Tragopogon miscellus by next-generation sequencing and Sequenom iPLEX MassARRAY genotyping.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

BLAST+: architecture and applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Development of genic-SSR markers by deep transcriptome sequencing in pigeonpea [Cajanus cajan (L.) Millspaugh].

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

msatcommander: detection of microsatellite repeat arrays and automated, locus‐specific primer design

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comprehensive transcriptome analysis of the highly complex Pisum sativum genome using next generation sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

OrchidBase: a collection of sequences of the transcriptome derived from orchids

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Selection patterns on restorer-like genes reveal a conflict between nuclear and mitochondrial genomes throughout angiosperm evolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Nonneutral evolution of organelle genes in Silene vulgaris

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

CD-HIT Suite: a web server for clustering and comparing biological sequences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Genealogical evidence for epidemics of selfish genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Transcriptome sequencing of lentil based on second-generation technology permits large-scale unigene assembly and SSR marker discovery

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Genomic admixture increases fitness during a biological invasion

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Adaptation and colonization history affect the evolution of clines in two introduced species

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

PoPoolation: a toolbox for population genetic analysis of next generation sequencing data from pooled individuals

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comparing de novo assemblers for 454 transcriptome data

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Phylogenetic evidence of host-specific cryptic species in the anther smut fungus

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Fast and accurate long-read alignment with Burrows-Wheeler transform

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The Sequence Alignment/Map format and SAMtools

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The sequence and de novo assembly of the giant panda genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

De novo sequencing and characterization of floral transcriptome in two species of buckwheat (Fagopyrum).

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comparative functional genomic analysis of Solanum glandular trichome types

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

RNA-seq: technical variability and sampling.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

A White Campion (Silene latifolia) floral expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

A genomic view of alternative splicing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 August 2009-30 September 2009.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Permanent Genetic Resources added to Molecular Ecology Resources Database 1 October 2009-30 November 2009.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Mitochondrial DNA diversity, population structure, and gender association in the gynodioecious plant Silene vulgaris

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Characterization of the horseweed (Conyza canadensis) transcriptome using GS-FLX 454 pyrosequencing and its application for expression analysis of candidate non-target herbicide resistance genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Cophylogeny of the anther smut fungi and their caryophyllaceous hosts: prevalence of host shifts and importance of delimiting parasite species for inferring cospeciation

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

A garter snake transcriptome: pyrosequencing, de novo assembly, and sex-specific differences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The population genomics of plant adaptation.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Heterogeneity of rDNA distribution and genome size in Silene spp.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Maximized virulence in a sterilizing pathogen: the anther-smut fungus and its co-evolved hosts

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Extensive loss of translational genes in the structurally dynamic mitochondrial genome of the angiosperm Silene latifolia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Polyploidy and angiosperm diversification

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The Bioperl toolkit: Perl modules for the life sciences

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Combining population genomics and quantitative genetics: finding the genes underlying ecologically important traits.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

De novo sequencing and analysis of the American ginseng root transcriptome using a GS FLX Titanium platform to discover putative genes involved in ginsenoside biosynthesis

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Mikimopine synthase (mis) gene on pRi1724.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Analysis of leaf and root transcriptomes of soil-grown Avena barbata plants

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Historical range expansion determines the phylogenetic diversity introduced during contemporary species invasion

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

High prevalence of multiple paternity within fruits in natural populations of Silene latifolia, as revealed by microsatellite DNA analysis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

The effect of breeding system on polymorphism in mitochondrial genes of Silene.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Comparison of next generation sequencing technologies for transcriptome characterization

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Global characterization of Artemisia annua glandular trichome transcriptome using 454 pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Using RNA-Seq for gene identification, polymorphism detection and transcript profiling in two alfalfa genotypes with divergent cell wall composition in stems

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Development of a EST dataset and characterization of EST-SSRs in a traditional Chinese medicinal plant, Epimedium sagittatum (Sieb. Et Zucc.) Maxim

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Identification of ovule transcripts from the Apospory-Specific Genomic Region (ASGR)-carrier chromosome

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

Inheritance of chloroplast DNA is not strictly maternal in Silene vulgaris (Caryophyllaceae): evidence from experimental crosses and natural populations

21 January 2018

1 reference

https://api.crossref.org/works/10.1111%2FJ.1755-0998.2011.03079.X

10.1111/J.1755-0998.2011.03079.X

21 January 2018

Identifiers

DOI

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21 June 2017

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