Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database (Q33971988)

30 July 2017

title

Comparative high-throughput transcriptome sequencing and development of SiESTa, the Silene EST annotation database (English)

1 reference

30 July 2017

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Alex Widmer

1 reference

30 July 2017

Nicolas Blavet

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Gabriel A B Marais

1 reference

30 July 2017

Delphine Charif

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30 July 2017

Christine Oger-Desfeux

series ordinal

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30 July 2017

language of work or name

English

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publication date

26 July 2011

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30 July 2017

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30 July 2017

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30 July 2017

page(s)

376

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Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery

30 July 2017

cites work

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A White Campion (Silene latifolia) floral expressed sequence tag (EST) library: annotation, EST-SSR characterization, transferability, and utility for comparative mapping

28 July 2018

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Sequencing and de novo analysis of a coral larval transcriptome using 454 GSFlx

28 July 2018

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Silene as a model system in ecology and evolution

28 July 2018

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InterPro: the integrative protein signature database

28 July 2018

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Rapidly developing functional genomics in ecological model systems via 454 transcriptome sequencing

28 July 2018

1 reference

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Survey of repetitive sequences in Silene latifolia with respect to their distribution on sex chromosomes.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Next-generation DNA sequencing

28 July 2018

1 reference

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Evolution of reproductive isolation in plants.

28 July 2018

1 reference

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High-throughput gene and SNP discovery in Eucalyptus grandis, an uncharacterized genome

28 July 2018

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Review. The genic view of plant speciation: recent progress and emerging questions.

28 July 2018

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Bird-like sex chromosomes of platypus imply recent origin of mammal sex chromosomes

28 July 2018

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Rapid transcriptome characterization for a nonmodel organism using 454 pyrosequencing.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

SNP discovery via 454 transcriptome sequencing

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Blast2GO: a universal tool for annotation, visualization and analysis in functional genomics research

28 July 2018

1 reference

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The pattern of polymorphism in Arabidopsis thaliana

28 July 2018

1 reference

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A gradual process of recombination restriction in the evolutionary history of the sex chromosomes in dioecious plants

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

prot4EST: translating expressed sequence tags from neglected genomes

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Nuclear matrix interactions at the human protamine domain: a working model of potentiation

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Unravelling angiosperm genome evolution by phylogenetic analysis of chromosomal duplication events

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

TIGR Gene Indices clustering tools (TGICL): a software system for fast clustering of large EST datasets

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Heterogeneity of rDNA distribution and genome size in Silene spp.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Comparing sequenced segments of the tomato and Arabidopsis genomes: large-scale duplication followed by selective gene loss creates a network of synteny

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Primer3 on the WWW for general users and for biologist programmers

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

CAP3: A DNA sequence assembly program

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Expression pattern and, surprisingly, gene length shape codon usage in Caenorhabditis, Drosophila, and Arabidopsis.

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Repeats in genomic DNA: mining and meaning

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

28 July 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Genetic structure of hybrid zones between Silene latifolia and Silene dioica (Caryophyllaceae): evidence for introgressive hybridization

28 July 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Genetic and ecological differentiation in the hybridizing campions Silene dioica and S. latifolia.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

A population genomic analysis of species boundaries: neutral processes, adaptive divergence and introgression between two hybridizing plant species

21 January 2018

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https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Housekeeping genes as internal standards: use and limits

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Microarray-based analysis of gene expression in very large gene families: the cytochrome P450 gene superfamily of Arabidopsis thaliana.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Characterization of the pectin methylesterase-like gene AtPME3: a new member of a gene family comprising at least 12 genes in Arabidopsis thaliana

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Retand: a novel family of gypsy-like retrotransposons harboring an amplified tandem repeat

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

An update of the Angiosperm Phylogeny Group classification for the orders and families of flowering plants: APG III

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Genome-wide identification of lineage-specific genes in Arabidopsis, Oryza and Populus.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Nucleotide diversity in Silene latifolia autosomal and sex-linked genes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Modeling sequencing errors by combining Hidden Markov models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1186%2F1471-2164-12-376

Gene discovery using massively parallel pyrosequencing to develop ESTs for the flesh fly Sarcophaga crassipalpis.

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Floral odour and reproductive isolation in two species of Silene.

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Sequencing Medicago truncatula expressed sequenced tags using 454 Life Sciences technology

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

QualitySNP: a pipeline for detecting single nucleotide polymorphisms and insertions/deletions in EST data from diploid and polyploid species

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

Genome sequencing in microfabricated high-density picolitre reactors

29 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3157477

LTR retrotransposons in the dioecious plant Silene latifolia

29 October 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/21791039

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1186/1471-2164-12-376

1 reference

Dimensions Publication ID

30 July 2017

1 reference

https://scigraph.springernature.com/pub.10.1186/1471-2164-12-376

9 September 2019

1 reference

30 July 2017

1 reference