Literature mining for the biologist: from information retrieval to biological discovery (Q30002370)

Untangling text data mining

21 January 2018

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Migraine and magnesium: eleven neglected connections

21 January 2018

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Somatomedin C and arginine: implicit connections between mutually isolated literatures

21 January 2018

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Linking estrogen to Alzheimer's disease: An informatics approach

21 January 2018

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Of truth and pathways: chasing bits of information through myriads of articles.

21 January 2018

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Facts from text--is text mining ready to deliver?

21 January 2018

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Automated extraction of information in molecular biology

31 March 2020

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Accomplishments and challenges in literature data mining for biology

31 March 2020

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Genomics and natural language processing

31 March 2020

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Text-mining and information-retrieval services for molecular biology

31 March 2020

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Concerted mechanism of Swe1/Wee1 regulation by multiple kinases in budding yeast.

31 March 2020

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An analysis of statistical term strength and its use in the indexing and retrieval of molecular biology texts

31 March 2020

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Mining literature for protein-protein interactions.

31 March 2020

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PreBIND and Textomy--mining the biomedical literature for protein-protein interactions using a support vector machine

31 March 2020

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PubFinder: a tool for improving retrieval rate of relevant PubMed abstracts

31 March 2020

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Extraction of transcript diversity from scientific literature

31 March 2020

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Ranking the whole MEDLINE database according to a large training set using text indexing

31 March 2020

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MedMiner: an Internet text-mining tool for biomedical information, with application to gene expression profiling

31 March 2020

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Textpresso: an ontology-based information retrieval and extraction system for biological literature

31 March 2020

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XplorMed: a tool for exploring MEDLINE abstracts

31 March 2020

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A gene network for navigating the literature

31 March 2020

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GoPubMed: exploring PubMed with the Gene Ontology

31 March 2020

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Tagging gene and protein names in biomedical text

31 March 2020

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GAPSCORE: finding gene and protein names one word at a time

31 March 2020

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Identifying gene and protein mentions in text using conditional random fields

31 March 2020

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ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text

31 March 2020

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Recognition of protein/gene names from text using an ensemble of classifiers

31 March 2020

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Using BLAST for identifying gene and protein names in journal articles.

31 March 2020

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Finding relevant references to genes and proteins in Medline using a Bayesian approach

31 March 2020

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Protein names precisely peeled off free text.

31 March 2020

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Exploring the boundaries: gene and protein identification in biomedical text

31 March 2020

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Automatically annotating documents with normalized gene lists

31 March 2020

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A simple approach for protein name identification: prospects and limits

31 March 2020

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ProMiner: rule-based protein and gene entity recognition

31 March 2020

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Gene name ambiguity of eukaryotic nomenclatures

31 March 2020

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Resolving abbreviations to their senses in Medline

31 March 2020

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Thesaurus-based disambiguation of gene symbols

31 March 2020

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GENETAG: a tagged corpus for gene/protein named entity recognition

31 March 2020

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Discovery of protein-protein interactions using a combination of linguistic, statistical and graphical information

31 March 2020

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Consolidating the set of known human protein-protein interactions in preparation for large-scale mapping of the human interactome

31 March 2020

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STRING: known and predicted protein-protein associations, integrated and transferred across organisms

31 March 2020

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From gene networks to gene function

31 March 2020

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Shared relationship analysis: ranking set cohesion and commonalities within a literature-derived relationship network

31 March 2020

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CoPub Mapper: mining MEDLINE based on search term co-publication

31 March 2020

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Integration of text- and data-mining using ontologies successfully selects disease gene candidates

31 March 2020

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Learning statistical models for annotating proteins with function information using biomedical text

31 March 2020

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Beyond the clause: extraction of phosphorylation information from medline abstracts

31 March 2020

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Extraction of regulatory gene/protein networks from Medline

31 March 2020

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Extracting human protein interactions from MEDLINE using a full-sentence parser

31 March 2020

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GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data

31 March 2020

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Extraction of protein interaction information from unstructured text using a context-free grammar

31 March 2020

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Discovering patterns to extract protein-protein interactions from the literature: Part II.

31 March 2020

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Fish oil, Raynaud's syndrome, and undiscovered public knowledge

31 March 2020

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Conceptual biology: unearthing the gems

31 March 2020

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Mining MEDLINE for implicit links between dietary substances and diseases

31 March 2020

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Extending the mutual information measure to rank inferred literature relationships

31 March 2020

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Using literature-based discovery to identify disease candidate genes.

31 March 2020

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HSF and Msn2/4p can exclusively or cooperatively activate the yeast HSP104 gene

31 March 2020

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Negative regulation of Gcn4 and Msn2 transcription factors by Srb10 cyclin-dependent kinase

31 March 2020

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Genetic factors that regulate the attenuation of the general stress response of yeast

31 March 2020

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The Ccr4-Not complex independently controls both Msn2-dependent transcriptional activation--via a newly identified Glc7/Bud14 type I protein phosphatase module--and TFIID promoter distribution.

31 March 2020

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Shared roles of yeast glycogen synthase kinase 3 family members in nitrogen-responsive phosphorylation of meiotic regulator Ume6p

31 March 2020

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Expression of the INO2 regulatory gene of Saccharomyces cerevisiae is controlled by positive and negative promoter elements and an upstream open reading frame

31 March 2020

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Transcriptional regulation of the squalene synthase gene (ERG9) in the yeast Saccharomyces cerevisiae

31 March 2020

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Life cycles of successful genes

31 March 2020

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Dynamic Complex Formation During the Yeast Cell Cycle

31 March 2020

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Differential activities of murine single minded 1 (SIM1) and SIM2 on a hypoxic response element. Cross-talk between basic helix-loop-helix/per-Arnt-Sim homology transcription factors

31 March 2020

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Automatic extraction of keywords from scientific text: application to the knowledge domain of protein families

31 March 2020

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Mining functional information associated with expression arrays

31 March 2020

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Use of keyword hierarchies to interpret gene expression patterns.

31 March 2020

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Mining microarray expression data by literature profiling

31 March 2020

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Using text analysis to identify functionally coherent gene groups

31 March 2020

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The computational analysis of scientific literature to define and recognize gene expression clusters

31 March 2020

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TXTGate: profiling gene groups with text-based information

31 March 2020

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Molecular triangulation: bridging linkage and molecular-network information for identifying candidate genes in Alzheimer's disease.

31 March 2020

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Association of genes to genetically inherited diseases using data mining

31 March 2020

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G2D: a tool for mining genes associated with disease

31 March 2020

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Systematic association of genes to phenotypes by genome and literature mining

31 March 2020

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Information extraction from full text scientific articles: where are the keywords?

31 March 2020

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Distribution of information in biomedical abstracts and full-text publications.

31 March 2020

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Assessing the accuracy of prediction algorithms for classification: an overview

31 March 2020

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Evaluation of text data mining for database curation: lessons learned from the KDD Challenge Cup.

31 March 2020

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Overview of BioCreAtIvE: critical assessment of information extraction for biology

31 March 2020

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Worldwide scientific publishing activity

31 March 2020

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31 March 2020

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Coauthorship networks and patterns of scientific collaboration

31 March 2020

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