Single cell transcriptomics of neighboring hyphae of Aspergillus niger (Q39983686)

16 September 2017

Single cell transcriptomics of neighboring hyphae of Aspergillus niger (English)

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16 September 2017

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Putative topoisomerase I

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Putative DNA-directed RNA polymerase II ABC10 alpha

5 February 2019

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5 February 2019

Sphinganine hydroxylase

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5 February 2019

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Ortholog(s) have cytoplasm localization

5 February 2019

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Cytoplasmic ribosomal protein of the small subunit S16.e

5 February 2019

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Arp2/3 complex 16kD subunit

5 February 2019

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Putative H+-transporting ATPase lipid-binding protein

5 February 2019

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5 February 2019

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Cytoplasmic ribosomal protein of the small subunit S9

5 February 2019

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5 February 2019

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1,4-alpha-D-glucan glucohydrolase

5 February 2019

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Putative NAD-dependent D-arabinitol dehydrogenase

5 February 2019

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Protein with strong similarity to the UvsH protein of A. nidulans which is involved in DNA repair and recombination

5 February 2019

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Putative 4-hydroxyacetophenone monooxygenase

6 February 2019

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Putative fumarate reductase

6 February 2019

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Putative stearoyl-CoA desaturase

6 February 2019

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20S CP alpha subunit of the proteasome

6 February 2019

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Putative phosphatidylinositol-phosphatidylcholine transfer protein

6 February 2019

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Putative vacuolar serine proteinase

6 February 2019

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Putative 3-methylcrotonyl-CoA carboxylase

6 February 2019

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Peptidyl-proline cis-trans isomerase

6 February 2019

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6 February 2019

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Putative alpha, alpha-trehalose-phosphate synthase

6 February 2019

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Putative glutathione S-transferase (GST)

6 February 2019

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6 February 2019

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Beta tubulin structural protein

6 February 2019

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Putative subunit VIII of ubiquinol-cytochrome c reductase

6 February 2019

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6 February 2019

Putative histone H4.1

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Putative malonyl CoA synthetase

6 February 2019

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6 February 2019

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Putative p-sulfobenzyl alcohol dehydrogenase

6 February 2019

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cytoplasmic ribosomal protein of the small subunit S4.e

6 February 2019

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6 February 2019

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6 February 2019

putative oxidoreductase

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6 February 2019

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Ortholog(s) have structural constituent of ribosome activity and 90S preribosome, cytosolic small ribosomal subunit, extracellular region localization

6 February 2019

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6 February 2019

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6 February 2019

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Putative condensin complex component

6 February 2019

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Putative NADH dehydrogenase chain precursor

6 February 2019

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Putative dihydrofolate reductase (DHFR)

6 February 2019

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Putative to translation initiation factor eIF-5

6 February 2019

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Cytoplasmic ribosomal protein of the large subunit L30

6 February 2019

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Putative ferric (and cupric) reductase

6 February 2019

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Ortholog(s) have role in chromatin silencing at centromere outer repeat region, mRNA cis splicing, via spliceosome and U2-type spliceosomal complex, nucleolus localization

6 February 2019

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40S ribosomal protein S28.e

6 February 2019

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Protein with strong similarity to the bud emergence mediator Bem1p of Saccharomyces cerevisiae

6 February 2019

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Ortholog of A. nidulans FGSC A4 : AN3215, AN7166, AN8609, A. fumigatus Af293 : Afu3g14210, Afu4g03360, Afu4g12510 and A. niger CBS 513.88 : An09g04200

6 February 2019

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Putative cellobiose dehydrogenase

6 February 2019

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Putative pyridoxamine-phosphate oxidase

6 February 2019

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Putative cell cycle regulator p21 protein

6 February 2019

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Putative NADH:ubiquinone reductase

6 February 2019

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6 February 2019

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6 February 2019

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Putative diacylglycerol acyl transferase

6 February 2019

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Putative signal sequence receptor alpha

6 February 2019

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6 February 2019

Putative endoglucanase

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putative transcription factor

6 February 2019

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Putative glucosamine-6-phosphate deaminase

6 February 2019

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Putative acyl-CoA dehydrogenase

6 February 2019

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Cytoplasmic ribosomal protein of the small subunit RP10B

6 February 2019

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Peptidoglycan GlcNAc deacetylase

6 February 2019

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6 February 2019

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single cell transcriptomics

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Han A B Wösten

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16 September 2017

Charissa de Bekker

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16 September 2017

Oskar Bruning

series ordinal

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16 September 2017

Martijs J Jonker

series ordinal

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16 September 2017

Timo M Breit

series ordinal

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16 September 2017

4 August 2011

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16 September 2017

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16 September 2017

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16 September 2017

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16 September 2017

R71

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Heterogeneity of Aspergillus niger microcolonies in liquid shaken cultures

16 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Single cell analysis: the new frontier in 'omics'.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Evaluation of methods for amplification of picogram amounts of total RNA for whole genome expression profiling

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

mRNA-Seq whole-transcriptome analysis of a single cell

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Integrated microfluidic bioprocessor for single-cell gene expression analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Single-RNA counting reveals alternative modes of gene expression in yeast

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Bistability, epigenetics, and bet-hedging in bacteria

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Microbial biofilms: e pluribus unum

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Partial nuclear pore complex disassembly during closed mitosis in Aspergillus nidulans

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

A new black Aspergillus species, A. vadensis, is a promising host for homologous and heterologous protein production

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Statistical significance for genomewide studies

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Single-cell transcriptional analysis of neuronal progenitors

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Global functional profiling of gene expression.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Summaries of Affymetrix GeneChip probe level data

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Gene Expression Omnibus: NCBI gene expression and hybridization array data repository

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Transcriptional control of yeast ribosomal protein synthesis during carbon-source upshift

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Transcriptional regulation of ribosomal proteins during a nutritional upshift in Saccharomyces cerevisiae

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Transformation of Aspergillus niger using the homologous orotidine-5'-phosphate-decarboxylase gene

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Effect of growth rate on the amounts of ribosomal and transfer ribonucleic acids in yeast

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Regulation of RNA synthesis in Neurospora crassa. An analysis of a shift-up

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Spatial differentiation in the vegetative mycelium of Aspergillus niger

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Regulation of the alpha-glucuronidase-encoding gene ( aguA) from Aspergillus niger

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

GlaA promoter controlled production of a mutant green fluorescent protein (S65T) by recombinant aspergillus niger during growth on defined medium in batch and fed-batch cultures

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

The concentrations of stable RNA and ribosomes in Rickettsia prowazekii

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Development of a homologous transformation system for Aspergillus niger based on the pyrG gene.

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Localization of growth and secretion of proteins in Aspergillus niger

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Heterogenic expression of genes encoding secreted proteins at the periphery of Aspergillus niger colonies

15 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Localization of protein secretion in fungal colonies using a novel culturing technique; the ring-plate system

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Square-plate culture method allows detection of differential gene expression and screening of novel, region-specific genes in Aspergillus oryzae.

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Hyphal differentiation in the exploring mycelium of Aspergillus niger

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

In situ hybridisation in filamentous fungi using peptide nucleic acid probes

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3245611

Stable nuclear RNA returns to post-division nuclei following release to the cytoplasm during mitosis

20 August 2018

1 reference

12 December 2020

An enzyme cocktail for efficient protoplast formation in Aspergillus niger

1 reference

12 December 2020

Inhibition of ribosomal RNA synthesis during a shift-down transition of growth in Neurospora crassa

1 reference

12 December 2020

In situ localization of the secretion of lignin peroxidases in colonies of Phanerochaete chrysosporium using a sandwiched mode of culture

1 reference

12 December 2020

Identifiers

DOI

10.1186/GB-2011-12-8-R71

1 reference

Dimensions Publication ID

16 September 2017

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1 reference

16 September 2017

PubMed publication ID

21816052

1 reference