Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches (Q36899121)

17 August 2017

Dissecting colony development of Neurospora crassa using mRNA profiling and comparative genomics approaches (English)

1 reference

peroxisome biosynthesis protein

17 August 2017

0 references

f-actin-capping protein subunit beta

0 references

coatomer subunit gamma

0 references

cytoskeleton assembly control protein Sla2

0 references

neuronal-specific septin-3

0 references

acetyl-CoA acetyltransferase-1

0 references

kelch domain-containing protein-containing protein

0 references

Lanosterol 14-alpha demethylase, putative

0 references

cutinase G-box binding protein

0 references

phosphatidylinositol 3-kinase 3

0 references

spa2-like protein, variant 1

0 references

spa2-like protein

0 references

0 references

MOB-2A, variant 1

0 references

MOB-2A, variant 2

0 references

MOB-2A

0 references

woronin body major protein

0 references

epsin-3

0 references

3-hydroxy-3-methylglutaryl-coenzyme A reductase

0 references

Cell polarity protein

0 references

Small Rho-type GTPase

0 references

cellular morphogenesis protein

0 references

sterol 24-C-methyltransferase

0 references

phosphomannomutase

0 references

0 references

fructosamine-3-kinase

0 references

dynactin ro-3

0 references

AP-2 complex subunit alpha

0 references

0 references

rho1, variant 1

0 references

rho1

0 references

1,3-beta-glucanosyltransferase Gel2

0 references

VeA-like protein

0 references

serine/threonine-protein kinase MAK

0 references

actin-interacting protein

0 references

rodlet protein

0 references

glycosylphosphatidylinositol anchor N-acetylglucosamine transferase

0 references

alpha-tubulin

0 references

Cell wall glucanase

0 references

cyclopropane-fatty-acyl-phospholipid synthase

0 references

protein kinase Yak1

0 references

DNA polymerase epsilon subunit C

0 references

zinc finger transcription factor 1

0 references

alpha-actinin

0 references

RER1 protein

0 references

rho-type GTPase, variant 1

0 references

Rho-type GTPase

0 references

heterotrimeric G protein

0 references

zinc finger transcription factor-24

0 references

zinc finger transcription factor-24

0 references

actin cytoskeleton-regulatory complex protein pan-1

0 references

C-5 sterol desaturase

0 references

FHA domain-containing protein

0 references

calmodulin-3

0 references

coronin-6

0 references

microtubule-associated protein RP/EB family member 1

0 references

ubiquitin ligase subunit CulD

0 references

0 references

3-ketodihydrosphingosine reductase tsc-10

0 references

VAD-1

0 references

protein kinase CHM1

0 references

coatomer subunit delta

0 references

ubiquitin ligase BRE1

0 references

ubiquitin ligase BRE1, variant 1

0 references

0 references

All development-altered regulator ADA-6

0 references

0 references

Protein serine/threonine kinase

0 references

sporulation protein SPS19

0 references

squalene monooxygenase, putative

0 references

putative methylsterol monooxygenase

0 references

putative methylsterol monooxygenase

0 references

Ca2+/H+ antiporter, variant 1

0 references

Ca2+/H+ antiporter

0 references

coatomer beta subunit

0 references

endo-1,6-beta-D-glucanase

0 references

GPI ethanolamine phosphate transferase 1

0 references

RHO family GTPase Rho2

0 references

conidiation-specific protein con-10

0 references

coatomer beta' subunit

0 references

serine/threonine-protein kinase orb6

0 references

serine/threonine-protein kinase gad8

0 references

beta-1,4-mannosyltransferase

0 references

AP-2 complex subunit mu-1

0 references

homeobox domain-containing protein

0 references

0 references

0 references

0 references

0 references

0 references

guanosine-diphosphatase

0 references

clock controlled protein CCG-1

0 references

cell wall biogenesis protein phosphatase Ssd1

0 references

fatty acid elongase

0 references

AP-1 complex subunit gamma-1

0 references

glucan synthesis regulatory protein

0 references

ATP-dependent helicase NAM7

0 references

acyl-CoA dehydrogenase

0 references

dihydroceramide delta(4)-desaturase

0 references

clock-controlled gene-15

0 references

clock-controlled gene-15, variant 1

0 references

condensing enzyme (mitochondrial)-6

0 references

peroxisomal membrane anchor protein

0 references

f-actin-capping protein subunit alpha

0 references

hydroxymethylglutaryl-CoA synthase

0 references

helicase swr-1

0 references

CRAL/TRIO domain-containing protein, variant 1

0 references

CRAL/TRIO domain-containing protein

0 references

AP-1 complex subunit beta-1

0 references

phosphatidylinositol-4-phosphate 5-kinase its3

0 references

serine/threonine kinase IREI

0 references

arid/bright domain-containing protein

0 references

1 reference

0 references

1 reference

Takao Kasuga

1 reference

PMC publication ID

2547062

17 August 2017

N Louise Glass

series ordinal

1 reference

17 August 2017

1 August 2008

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

17 August 2017

1 reference

17 August 2017

1549-1564

1 reference

The chemical genomic portrait of yeast: uncovering a phenotype for all genes

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Transcriptional control in embryonic Drosophila midline guidance assessed through a whole genome approach

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Localization of RHO-4 indicates differential regulation of conidial versus vegetative septation in the filamentous fungus Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Transcriptional profiling of cross pathway control in Neurospora crassa and comparative analysis of the Gcn4 and CPC1 regulons

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Enabling a community to dissect an organism: overview of the Neurospora functional genomics project

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Genome sequencing and analysis of the versatile cell factory Aspergillus niger CBS 513.88

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Hyphal growth: a tale of motors, lipids, and the Spitzenkörper.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The structure and synthesis of the fungal cell wall

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Functional characterization of Aspergillus nidulans homologues of Saccharomyces cerevisiae Spa2 and Bud6.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Mutational analysis of the glycosylphosphatidylinositol (GPI) anchor pathway demonstrates that GPI-anchored proteins are required for cell wall biogenesis and normal hyphal growth in Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Long-oligomer microarray profiling in Neurospora crassa reveals the transcriptional program underlying biochemical and physiological events of conidial germination

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A Rho-type GTPase, rho-4, is required for septation in Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Cell polarity: ROPing the ends together

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Directional cell expansion--turning toward actin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Telomeric heterochromatin propagation and histone acetylation control mutually exclusive expression of antigenic variation genes in malaria parasites

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Polarized gene expression determines woronin body formation at the leading edge of the fungal colony

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Polarisome meets spitzenkörper: microscopy, genetics, and genomics converge

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The FunCat, a functional annotation scheme for systematic classification of proteins from whole genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Lessons from the genome sequence of Neurospora crassa: tracing the path from genomic blueprint to multicellular organism

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Hyphal homing, fusion and mycelial interconnectedness

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Cytoskeleton and motor proteins in filamentous fungi

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The genetic basis of cellular morphogenesis in the filamentous fungus Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The genome sequence of the filamentous fungus Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

What's in the genome of a filamentous fungus? Analysis of the Neurospora genome sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Expression profiling of the schizont and trophozoite stages of Plasmodium falciparum with a long-oligonucleotide microarray

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Involvement of the Arp2/3 complex and Scar2 in Golgi polarity in scratch wound models

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Bayesian analysis of gene expression levels: statistical quantification of relative mRNA level across multiple strains or treatments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Design issues for cDNA microarray experiments

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Plasmodium telomeres: a pathogen's perspective

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Lineage-specific loss and divergence of functionally linked genes in eukaryotes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A new self-assembled peroxisomal vesicle required for efficient resealing of the plasma membrane

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A combined algorithm for genome-wide prediction of protein function

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Functional characterization of the S. cerevisiae genome by gene deletion and parallel analysis

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Assigning protein functions by comparative genome analysis: Protein phylogenetic profiles

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Cluster analysis and display of genome-wide expression patterns

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Protoplasmic organization of hyphal tips among fungi: vesicles and Spitzenkörper

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Isolation and characterization of genes differentially expressed during conidiation of Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The SPA2 protein of yeast localizes to sites of cell growth

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Molecular cloning of genes under control of the circadian clock in Neurospora

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The SPA2 gene of Saccharomyces cerevisiae is important for pheromone-induced morphogenesis and efficient mating

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A Model for Hyphal Growth and Branching

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Effect of temperature and temperature shifts on growth and branching of a wild type and a temperature sensitive colonial mutant (Cot 1) of Neurospora crassa

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Spatial differentiation in the vegetative mycelium of Aspergillus niger

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Hyphal tips of wild-type and spreading colonial mutants of Neurospora crassa.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

A morphological and genetic analysis of conidiophore development in Neurospora crassa

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Cell-specific accumulation of Drosophila proteasomes (MCP) during early development

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Developmental expression of genes involved in conidiation and amino acid biosynthesis in Neurospora crassa

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The Neurospora circadian clock-controlled gene, ccg-2, is allelic to eas and encodes a fungal hydrophobin required for formation of the conidial rodlet layer

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Lack of the GTPase RHO-4 in Neurospora crassa causes a reduction in numbers and aberrant stabilization of microtubules at hyphal tips

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

The Aspergillus nidulans putative kinase, KfsA (kinase for septation), plays a role in septation and is required for efficient asexual spore formation.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Mass flow and pressure-driven hyphal extension in Neurospora crassa

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Roles of fission yeast tea1p in the localization of polarity factors and in organizing the microtubular cytoskeleton

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Rop GTPase: a master switch of cell polarity development in plants

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Ca(2+) shuttling in vesicles during tip growth in Neurospora crassa

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Hex-1, a gene unique to filamentous fungi, encodes the major protein of the Woronin body and functions as a plug for septal pores

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Functional and structural genomics using PEDANT.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Comparative Genomics in Hemiascomycete Yeasts: Evolution of Sex, Silencing, and Subtelomeres

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2547062

Determinants of substitution rates in mammalian genes: expression pattern affects selection intensity but not mutation rate

4 December 2018

1 reference

12 December 2020

Cargo binding and regulatory sites in the tail of fungal conventional kinesin

1 reference

12 December 2020

Statistical design and the analysis of gene expression microarray data

1 reference

12 December 2020

Designing Experiments Using Spotted Microarrays to Detect Gene Regulation Differences Within and Among Species

1 reference

12 December 2020

Accelerated Evolutionary Rate May Be Responsible for the Emergence of Lineage-Specific Genes in Ascomycota

1 reference

12 December 2020

Isolation and characterization of a Neurospora glucose-repressible gene

1 reference

12 December 2020

Whole genome comparison of theA. fumigatusfamily

1 reference

12 December 2020

Identifiers

DOI

10.1128/EC.00195-08

1 reference

17 August 2017

1 reference

PMC publication ID

2547062

17 August 2017

PubMed publication ID

18676954

1 reference

PMC publication ID

2547062