Integration of omic networks in a developmental atlas of maize. (Q38443626)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

title

Integration of omic networks in a developmental atlas of maize (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

James C Schnable

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Ryan C Sartor

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Zhouxin Shen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Kevin J Wu

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Mark A Urich

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Joseph R Nery

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Laurie G Smith

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

Steven P Briggs

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

language of work or name

English

0 references

publication date

1 August 2016

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

volume

353

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

issue

6301

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

page(s)

814-818

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

A high-resolution tissue-specific proteome and phosphoproteome atlas of maize primary roots reveals functional gradients along the root axes.

21 March 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Correlation of mRNA and protein abundance in the developing maize leaf

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

On protocols and measures for the validation of supervised methods for the inference of biological networks

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Reconstruction of protein networks from an atlas of maize seed proteotypes.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Temporal transcriptional response to ethylene gas drives growth hormone cross-regulation in Arabidopsis.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Processing and subcellular trafficking of ER-tethered EIN2 control response to ethylene gas.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Systems-based analysis of Arabidopsis leaf growth reveals adaptation to water deficit

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Unraveling the KNOTTED1 regulatory network in maize meristems.

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Wisdom of crowds for robust gene network inference

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Deep proteome and transcriptome mapping of a human cancer cell line

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Independently evolved virulence effectors converge onto hubs in a plant immune system network

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Comparative analysis of proteome and transcriptome variation in mouse

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

RNA sequencing reveals two major classes of gene expression levels in metazoan cells

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Global quantification of mammalian gene expression control

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Genes identified by visible mutant phenotypes show increased bias toward one of two subgenomes of maize

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Inferring Regulatory Networks from Expression Data Using Tree-Based Methods

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Advantages and limitations of current network inference methods

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Sequence signatures and mRNA concentration can explain two-thirds of protein abundance variation in a human cell line

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

The control of axillary meristem fate in the maize ramosa pathway

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

WGCNA: an R package for weighted correlation network analysis

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Geometric interpretation of gene coexpression network analysis

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Epstein-Barr virus and virus human protein interaction maps

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Global analysis of protein expression in yeast

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

A gene-coexpression network for global discovery of conserved genetic modules

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Predicting gene function by conserved co-expression

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Protein pathway and complex clustering of correlated mRNA and protein expression analyses in Saccharomyces cerevisiae

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Lethality and centrality in protein networks

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Error and attack tolerance of complex networks

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Ectopic expression of the knox homeo box gene rough sheath1 alters cell fate in the maize leaf

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Parallel proteomic and phosphoproteomic analyses of successive stages of maize leaf development

23 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Gene regulatory networks in plants: learning causality from time and perturbation

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Reverse-engineering transcription control networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Computational discovery of gene modules and regulatory networks

31 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5808982

Genome-wide characterization of cis-acting DNA targets reveals the transcriptional regulatory framework of opaque2 in maize

31 August 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

Modification site localization scoring: strategies and performance

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

A tissue-specific atlas of mouse protein phosphorylation and expression

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

Refinements to label free proteome quantitation: how to deal with peptides shared by multiple proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

Ultrafast and memory-efficient alignment of short DNA sequences to the human genome

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

TopHat2: accurate alignment of transcriptomes in the presence of insertions, deletions and gene fusions

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

Accounting for experimental noise reveals that mRNA levels, amplified by post-transcriptional processes, largely determine steady-state protein levels in yeast

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

GRASSIUS: a platform for comparative regulatory genomics across the grasses

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

MAPMAN: a user-driven tool to display genomics data sets onto diagrams of metabolic pathways and other biological processes

21 January 2018

1 reference

https://api.crossref.org/works/10.1126%2FSCIENCE.AAG1125

21 January 2018

Identifiers

DOI

10.1126/SCIENCE.AAG1125

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json

21 March 2020

PubMed publication ID

27540173

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27540173%20AND%20SRC:MED&resulttype=core&format=json