A tissue-specific atlas of mouse protein phosphorylation and expression (Q29616549)

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18 January 2020

title

A tissue-specific atlas of mouse protein phosphorylation and expression (English)

2 references

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30 April 2017

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18 January 2020

1 reference

1 reference

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18 January 2020

1 reference

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18 January 2020

Steven P Gygi

1 reference

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18 January 2020

Sean A Beausoleil

1 reference

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18 January 2020

Mark P Jedrychowski

1 reference

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18 January 2020

Joshua E Elias

1 reference

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18 January 2020

Tapasree Goswami

1 reference

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18 January 2020

Ramin Rad

1 reference

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18 January 2020

Wilhelm Haas

1 reference

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18 January 2020

Mathew E Sowa

1 reference

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18 January 2020

language of work or name

1 reference

30 April 2017

publication date

1 December 2010

1 reference

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18 January 2020

2 references

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30 April 2017

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18 January 2020

volume

143

2 references

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30 April 2017

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18 January 2020

2 references

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30 April 2017

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18 January 2020

page(s)

1174-1189

1 reference

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An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

18 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Quantitative phosphoproteomics reveals widespread full phosphorylation site occupancy during mitosis

30 April 2017

1 reference

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KEGG for representation and analysis of molecular networks involving diseases and drugs

30 April 2017

1 reference

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STRING 8--a global view on proteins and their functional interactions in 630 organisms

30 April 2017

1 reference

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The human disease network

30 April 2017

1 reference

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Target-decoy search strategy for increased confidence in large-scale protein identifications by mass spectrometry

30 April 2017

1 reference

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Connecdenn, a novel DENN domain-containing protein of neuronal clathrin-coated vesicles functioning in synaptic vesicle endocytosis

30 April 2017

1 reference

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Global, in vivo, and site-specific phosphorylation dynamics in signaling networks

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

A probability-based approach for high-throughput protein phosphorylation analysis and site localization

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Global survey of organ and organelle protein expression in mouse: combined proteomic and transcriptomic profiling

30 April 2017

1 reference

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The MAP2/Tau family of microtubule-associated proteins

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

PhosphoSite: A bioinformatics resource dedicated to physiological protein phosphorylation

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

A gene atlas of the mouse and human protein-encoding transcriptomes

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

LKB1 is a master kinase that activates 13 kinases of the AMPK subfamily, including MARK/PAR-1

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

MARKK, a Ste20-like kinase, activates the polarity-inducing kinase MARK/PAR-1

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Scansite 2.0: Proteome-wide prediction of cell signaling interactions using short sequence motifs

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

DAVID: Database for Annotation, Visualization, and Integrated Discovery

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

SNARE-mediated membrane fusion

30 April 2017

1 reference

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Gene ontology: tool for the unification of biology

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Protein secondary structure prediction based on position-specific scoring matrices

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Linear Motif Atlas for Phosphorylation-Dependent Signaling

30 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Brain phosphoproteome obtained by a FASP-based method reveals plasma membrane protein topology.

30 April 2017

1 reference

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A global map of human gene expression

3 June 2018

1 reference

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BAD: undertaker by night, candyman by day.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Structure and regulation of MARK, a kinase involved in abnormal phosphorylation of Tau protein

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Predicting protein post-translational modifications using meta-analysis of proteome scale data sets

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Comparative proteomic phenotyping of cell lines and primary cells to assess preservation of cell type-specific functions

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

The SCX/IMAC enrichment approach for global phosphorylation analysis by mass spectrometry

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Regulation and function of triacylglycerol lipases in cellular metabolism

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Deep coverage mouse red blood cell proteome: a first comparison with the human red blood cell

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Glycogen synthase kinase 3: a key regulator of cellular fate.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Large-scale phosphorylation analysis of mouse liver

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Control of adipose triglyceride lipase action by serine 517 of perilipin A globally regulates protein kinase A-stimulated lipolysis in adipocytes

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

The MAP1 family of microtubule-associated proteins

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Defective lipolysis and altered energy metabolism in mice lacking adipose triglyceride lipase

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Length-dependent prediction of protein intrinsic disorder.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Syk tyrosine kinase participates in beta1-integrin signaling and inflammatory responses in airway epithelial cells

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

The Protein Information Resource

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

A protein kinase A-dependent molecular switch in synapsins regulates neurite outgrowth

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Phosphorylation states of microtubule-associated protein 2 (MAP2) determine the regulatory role of MAP2 in microtubule dynamics

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Autoactivation of catalytic (C alpha) subunit of cyclic AMP-dependent protein kinase by phosphorylation of threonine 197

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Glycogen synthase kinase (GSK) 3beta directly phosphorylates Serine 212 in the regulatory loop and inhibits microtubule affinity-regulating kinase (MARK) 2.

3 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Phospho.ELM: a database of phosphorylation sites--update 2008.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Differential expression of spleen tyrosine kinase Syk isoforms in tissues: Effects of the microbial flora.

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Selective Isolation at the Femtomole Level of Phosphopeptides from Proteolytic Digests Using 2D-NanoLC-ESI-MS/MS and Titanium Oxide Precolumns

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Inhibition of unwanted proteolysis during sample preparation: evaluation of its efficiency in challenge experiments

26 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3035969

Non-functional phosphorylations?

26 November 2018

1 reference

https://pubmed.ncbi.nlm.nih.gov/21183079

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Cytoscape: a software environment for integrated models of biomolecular interaction networks

1 reference

20 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1101/GR.1239303

Identifiers

DOI

10.1016/J.CELL.2010.12.001

3 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21183079

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183079%20AND%20SRC:MED&resulttype=core&format=json

18 January 2020

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21183079

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183079%20AND%20SRC:MED&resulttype=core&format=json

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/esummary.fcgi?db=pubmed&retmode=json&id=21183079

18 January 2020

PubMed publication ID

3 references

30 April 2017

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21183079%20AND%20SRC:MED&resulttype=core&format=json